PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0318s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | NF-YC | ||||||||
Protein Properties | Length: 221aa MW: 25285.1 Da PI: 6.2269 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 172.8 | 3.7e-54 | 52 | 156 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 ql+ fw++q ie++++f+nh+lPlarikki+k+dedvkmi+aeaPvl++kace+fileltlrsw+h+eenkrrtl+++dia a+tr Sphfalx0318s0004.1.p 52 QLQIFWQQQiqeIEQVNEFRNHQLPLARIKKIMKSDEDVKMIAAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRG 140 89*****9988899*************************************************************************** PP NF-YC 87 difdflvdivprdelk 102 difdflvdivprdelk Sphfalx0318s0004.1.p 141 DIFDFLVDIVPRDELK 156 *************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.21E-33 | 34 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-21 | 74 | 137 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.1E-36 | 75 | 152 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAAHQMPTTA SGMPHPNAVI PAQYAHAQPQ PLQQQQQQMQ PQLHYQHVQK QQLQIFWQQQ 60 IQEIEQVNEF RNHQLPLARI KKIMKSDEDV KMIAAEAPVL FAKACEMFIL ELTLRSWIHT 120 EENKRRTLQR NDIAGAITRG DIFDFLVDIV PRDELKDEDL AVPWAGVPGE PVPYGNMYYP 180 PIQGQPMHHP MATPEMMVGQ PALAQNPQMM YQPPQQGQMQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-53 | 60 | 152 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 130 | RRTLQRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369382.1 | 7e-98 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q9SMP0 | 1e-67 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2K1KUV7 | 2e-93 | A0A2K1KUV7_PHYPA; Uncharacterized protein | ||||
TrEMBL | A0A2R6X8T8 | 2e-93 | A0A2R6X8T8_MARPO; Uncharacterized protein | ||||
STRING | PP1S315_9V6.3 | 3e-97 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 5e-59 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0318s0004.1.p |
Publications ? help Back to Top | |||
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