PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0313s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 1327aa MW: 148411 Da PI: 4.8738 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.6e-07 | 1303 | 1325 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C+f+a+ G+Ck+G++C F H Sphfalx0313s0006.1.p 1303 KDVPCKFHAQ-GYCKRGETCVFRH 1325 6789**9999.***********77 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 3.4E-10 | 253 | 311 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 4.43E-9 | 254 | 311 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50016 | 8.573 | 257 | 323 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15568 | 5.56E-20 | 259 | 304 | No hit | No description |
SMART | SM00249 | 6.4E-8 | 259 | 305 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 260 | 320 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.245.10 | 1.4E-21 | 515 | 597 | IPR003121 | SWIB/MDM2 domain |
SuperFamily | SSF47592 | 2.4E-18 | 516 | 596 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00151 | 4.9E-4 | 525 | 597 | IPR019835 | SWIB domain |
Pfam | PF02201 | 3.9E-15 | 534 | 592 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00719 | 1.2E-31 | 654 | 764 | IPR004343 | Plus-3 domain |
PROSITE profile | PS51360 | 23.856 | 654 | 787 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 4.18E-27 | 655 | 784 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 4.2E-19 | 659 | 762 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 1.96E-16 | 1060 | 1116 | IPR003169 | GYF domain |
CDD | cd00072 | 7.97E-15 | 1064 | 1119 | No hit | No description |
PROSITE profile | PS50829 | 14.916 | 1064 | 1118 | IPR003169 | GYF domain |
SMART | SM00444 | 3.1E-16 | 1065 | 1120 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 6.2E-17 | 1066 | 1117 | IPR003169 | GYF domain |
Pfam | PF02213 | 4.4E-13 | 1067 | 1110 | IPR003169 | GYF domain |
PROSITE profile | PS50103 | 14.305 | 1301 | 1326 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 1301 | 1326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-5 | 1303 | 1325 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010964 | Biological Process | regulation of chromatin silencing by small RNA | ||||
GO:0032776 | Biological Process | DNA methylation on cytosine | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0042393 | Molecular Function | histone binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1327 aa Download sequence Send to blast |
MMLAMTTRCF TGKDAMERTE EEGEEKQQQK ARLFGEVLVD KSFSNSSSSN SPPSPPAAPA 60 AGAIVQTLVV AQTANDDGVV VVHENSLDDD KEQKEMVMIQ EGENLKQEPA NDVDESGVQT 120 MHLEENVKAE EEEEQQQQIA EEAEEDVPQQ KAQVAAAAAT IKPEDKTEQE EQDAAAEMLL 180 LPPQASGMEE QQQEGDEGKV VKKEEPYHHQ NDDNNNNNSS RKRALGLVQE RQKKQCRRGG 240 GGGGGGHAVE ERKKDEEDVC YICFDGGDLV MCDRRSCPKA YHLNCIGRDA AFFRKKGAWI 300 CGWHFCSSCT KPGSFQCYMC PIAYCGGCVK EADFCMLRKR KGLCEECLPI VIMIECSQTV 360 NSEGVEVDFE DKETYECLFK EYWLGLKNRL SLTLPKLDKD GKLAKGICED SENGGSDTEN 420 QDPSDVDGLG TESDRESDQD EDDSLDGKNP SRKKIKVAPT LSEFLVVENK ADAFTEGAED 480 KEDEENEDEQ EEEDEEDDDG DDDDDVSEVQ SRKIEGWASK EVLDFIVHMK ADPMKPLTRF 540 AVNHLLWVYI KRHQLQDPEK KSQILCDERL QAMFGKKLMG QSEMYRQLNE HFPPKDSANG 600 AKSLKELDRT VKDDARETDG TEDKLDRDMA KDRRRGRRRS DEKFERPDGN DFAAISPKNI 660 GLIYLRRALL ENLLDDPEFN SKVVDTFVKI RVPGSVSTLD MCYRLVLVTG TRQQTEFYKA 720 GKKLTNVVLE ILNLQRKEDL TIDLASNQDF NEEECQRLRQ SIKCGFIKTL TVGQLEAKAI 780 ALQEVKVNDW FETERQRLVN LRDRASEKGR KKELRECVEK LQELSNPKFR AAKLHARPEV 840 SADPRMGPGY ESDVSDEKPI TDEFSSYRTK VSPGISREKG SAVPSYNRLD SSNVEDSSFG 900 GQKVDGDSHR HKPSSARENN VGGRDWSQKG YEAGRSSDRS FVRDINLMQE KSHRNEERGG 960 GRSWTKDHRV YVQEQLSDQG GAEGLRATGK SHGDHWAGDS TGSKFVKDEF RTPLFDQPKV 1020 YPGGLQRESV GPAAAVLPLS NIGVTPLEPS VMKNQIALDM MEKEKVWHYQ DPTGTVQGPF 1080 SMEQLRKWNT TGLFPVDLRI RRTGETHENS ILLTSALAGK FTQERDPWTT TSTMTGFQSS 1140 TRDPVGGSSV SGLGEVKGST WVGVRGTGDD RRWDTKRGEP DVPTRSTYSG TREWVEDHNA 1200 IEDRGSGWSR VRNSIYGSTP SASGRVDARG PLRSRGDNDS WAPQLLAGGS RGQGLQDSGN 1260 GAGKSNWGRY SGRDSSNTGS WNDDSGSRDR SYLSERSSRL SKKDVPCKFH AQGYCKRGET 1320 CVFRHE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4gnd_A | 6e-13 | 251 | 325 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gnd_C | 6e-13 | 251 | 325 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gne_A | 6e-13 | 251 | 325 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gnf_A | 6e-13 | 251 | 325 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gng_A | 6e-13 | 251 | 325 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
4gng_D | 6e-13 | 251 | 325 | 9 | 80 | Histone-lysine N-methyltransferase NSD3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396631.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
Refseq | XP_024396632.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
Refseq | XP_024396633.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
Refseq | XP_024396634.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
Refseq | XP_024396635.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
Refseq | XP_024396636.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
Refseq | XP_024396637.1 | 0.0 | zinc finger CCCH domain-containing protein 19-like | ||||
TrEMBL | A0A2K1JCZ0 | 0.0 | A0A2K1JCZ0_PHYPA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51120.1 | 1e-108 | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0313s0006.1.p |