PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0310s0010.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 757aa    MW: 83871.6 Da    PI: 5.1535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0310s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13544590455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h ++Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++Lq
  Sphfalx0310s0010.1.p 544 NHVQAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAITYIQELQ 590
                           6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-5759241IPR025610Transcription factor MYC/MYB N-terminal
PROSITE patternPS010540279287IPR018225Transaldolase, active site
CDDcd000832.38E-15538594No hitNo description
PROSITE profilePS5088817.13540589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-19543608IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-19544607IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10544590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-18546595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
METQRMMEGH MRSLCGDEDM MMLEAFIGTG DYSSSPLPGT SNSVQAQGGD LAGNGETALQ  60
RMLQHLVDER PENWTYVIFW QLSSTPSGDM LVWGDGYFKG REEDLLENEQ SQRGCREEDQ  120
QLRRKILGEL QALVGSSEDD AAASSGLDYV TDTEWFYLVS MSYSFAWGHG IPGRALSTGQ  180
HVWLIEANKA SNQICTRAHL AMMAGIQTIL CVPTGTGVLE LGSTDLIAEN LHVVHNIKTL  240
FDESAWGFND VAALSMQVNW NPDFLQPSSS NANMTVTNGS TSNPSLISTA SGVATGSRGY  300
FQMDKMVSSM ASTNMESFDS FWSEDFPFGS DVVSADTVDK EHALRGLSPF TVDRSPLYED  360
RHSLLASSPP TPILSSVSEV KPSVLPHGIA TRSLAPLERP SSASRIERPQ INLLTSYGYT  420
EQKDVQEVTE ISKHFEPKQS MTLIQPVLEE KVPTIHTRGH NMKILAEKPS PVLKSQQQQP  480
IEIKGPPTHN VFGRSSIDQS ELDCIESESE VTFKDSVECS LSIGPRPPRK RGRKPANDRE  540
EPLNHVQAER QRREKLNQRF YALRAVVPNV SKMDKASLLG DAITYIQELQ QKLQESESQI  600
EELQSRCASD SSNKPGHDRT PVPIITTTTS NFTKEEFHPN SERSAKGAAA PLLRELLVEE  660
KPTLNVHIMG QEAMIRLNCL KHIYTIADVI LALQDLRLEI KHSNTSTVDN TMLHIVIVKM  720
KLAELLTKEQ LLVSLESALQ TRGMVKQRQA FQLAGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-32562426193Transcription factor MYC3
4rqw_B8e-32562426193Transcription factor MYC3
4rs9_A8e-32562426193Transcription factor MYC3
4yz6_A8e-32562426193Transcription factor MYC3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-41bHLH family protein