PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0309s0007.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 678aa    MW: 74411.1 Da    PI: 7.4985
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0309s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07512533527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           +C ff+r G+Ck G rC+F Hg+
  Sphfalx0309s0007.1.p 512 PCYFFLR-GHCKKGTRCHFLHGQ 533
                           8******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.24239261IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12239261IPR007087Zinc finger, C2H2
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
SMARTSM0035528262286IPR015880Zinc finger, C2H2-like
PfamPF104533.7E-10303338IPR019496Nuclear fragile X mental retardation-interacting protein 1, conserved domain
SMARTSM003560.0033508533IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5508532IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4512533IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5512534IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493512534IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MRPAPQHIYG QPPGNRYMPP PAPHLHPPPH PGYGRGGHAL AVVQGPDQGH PIMQQQQHQQ  60
QQHQLYSSMP TMGIPIGSPG IPLQYDYTPS PLAREVSQQP WPPTFIQTRP QWGPRVDHSG  120
PPRQLNGPFL NTNAQSNGPF LNTNAQSNGP FLNTNAHHNA PYVYHPSPET SADRATGNGR  180
SNFTGMGRGR GVSSDRRGST MKDSTKDAMK DSTKDLPKDS QPSSSRPLQG PIVYSEKSLR  240
CEACAKTFYV PDQLEAHITS HIPCDEPNCS FSSSGKMMKE HKLVVHGKRS VPLSEKALKA  300
AAKETEDDVR RWREERKRNY PTALNIQQKA ERAKLESKEL IEDAKLRRQR LKEILHRQAE  360
LGVPVADIPS SYMSDHSATD NSKLPNKNQN KTDNVPSSAN ILSNQMCTPT KALKRDAEQN  420
ETQVEEQGER PSKIARINLE PSSNLVNGSS TSSELVVLED SKVSKGSQCL QEDALTNGMV  480
GSVALSDHVD GKPTVPEKVS GSELPRTHFD QPCYFFLRGH CKKGTRCHFL HGQQPRAKSG  540
DETAGAKSGD ETADISREGK QKGGVSTLLV KVSGSKQIDK SCILECLRFI VKNSFLLEWP  600
TKPLEFFVQV KEDAGNGREE EEASPPVDIL AADATNLINQ IDASDAQIDQ IDPLRWPPSA  660
TVGTVESIEE DGERSSV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-