PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0301s0002.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 670aa    MW: 74777.5 Da    PI: 9.708
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0301s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.3e-1319109299
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           +k+ +++++lk+ r+ +pk+f+e +g++   +  + +e +sg++W  ++++ +++ ++y+++  Wk F+   gLk gD ++F+l+ +s 
  Sphfalx0301s0002.1.p  19 LKT-VTENSLKN-RMHIPKPFVECYGSE--LKGSINIEGPSGEVWLAEVSIvDQGLDGYWFG--WKAFATHIGLKKGDQLLFTLIAKSH 101
                           444.45666665.6********888766..4447***************7779999999986..*********************9899 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v+vf++
  Sphfalx0301s0002.1.p 102 F--NVRVFDE 109
                           9..9999986 PP
2B351.91.4e-16278368498
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                            ++ps+v +  +l +p +fa++h  +  e+++l+led +g +W  +    ++ gr  l++GW  F +++ L+egD++v +++++ + + 
  Sphfalx0301s0002.1.p 278 LMKPSHVYRGFWLNIPCDFAKSHFPN--EDTDLILEDDNGYKWPARW--LRNAGRRGLSGGWGTFSRDHFLEEGDVCVYEVVDSCNWRI 362
                           6899*******************844..6789***************..77777778***********************99998889* PP

                           EEEEE- CS
                    B3  93 vvkvfr 98 
                           vv++fr
  Sphfalx0301s0002.1.p 363 VVHIFR 368
                           ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-1913110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1914110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.99716110IPR003340B3 DNA binding domain
CDDcd100177.70E-1616108No hitNo description
PfamPF023627.6E-1118109IPR003340B3 DNA binding domain
SMARTSM010192.3E-1218110IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-24268368IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-22269368IPR015300DNA-binding pseudobarrel domain
CDDcd100175.95E-23273368No hitNo description
PROSITE profilePS5086313.338275370IPR003340B3 DNA binding domain
SMARTSM010196.0E-15275370IPR003340B3 DNA binding domain
PfamPF023626.0E-15277368IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MKGDIPSPSV QAQRFPCFLK TVTENSLKNR MHIPKPFVEC YGSELKGSIN IEGPSGEVWL  60
AEVSIVDQGL DGYWFGWKAF ATHIGLKKGD QLLFTLIAKS HFNVRVFDES GLEYTSLENK  120
GNAVTTADRK RKKRENSDDE ILDSKSCHDV HNSGGDEKLT SEQQPTVRSF YQDTKCKGGA  180
TSGGTVEAEL VGYNSTKDVP RKRLSTQMRG MIAHNKFPEK PNVKPPKPSS KENMQKCAPG  240
LYSQTWESRR RPVTEAERQK TMDAALALKT EYPSVVVLMK PSHVYRGFWL NIPCDFAKSH  300
FPNEDTDLIL EDDNGYKWPA RWLRNAGRRG LSGGWGTFSR DHFLEEGDVC VYEVVDSCNW  360
RIVVHIFRVV DVKITPGSRG EGCLHYRVVK GAGYHKSSWK NLKVNNAPMK THSRKSPHVF  420
SKLQKKQGRN WLKMALQKLS HKATEPKTGM SKAAPEGGVM MADDTQVDIK PTFMVQSVSP  480
KPSHCSSAGP ILAGDMDKVP NIDVKPAPEQ WRPFLKQYYD AARTDTEVDV KPKVKVESGT  540
LKTPPPCCAV PIPIAKMGKV QLPSIDVKPS PKQLKAALRH VCDARSNGFN THEAALASET  600
LEPSPKPMYK VSRLISRRMK KGAAEREFMV ELEGAVANKL QSGSESKNGE NHLWIPYSHF  660
SPDFKSCYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1624236916142B3 domain-containing transcription factor VRN1
4i1k_B1e-1624236916142B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128132RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-24B3 family protein