PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0299s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ARF | ||||||||
Protein Properties | Length: 845aa MW: 94244.9 Da PI: 6.0866 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.1 | 4e-24 | 133 | 233 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+a++L++gD+v+F Sphfalx0299s0001.1.p 133 FCKILTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDQEWHFRHIYRGQPRRHLLTTGWSVFVSAKRLQAGDSVLF 219 99*****************************8544444..48*********************************************** PP EE-SSSEE..EEEEE- CS B3 83 kldgrsefelvvkvfr 98 ++++++l+++++r Sphfalx0299s0001.1.p 220 I--RDDKGQLLLGIRR 233 *..5578889999998 PP | |||||||
2 | Auxin_resp | 119.8 | 2.2e-39 | 259 | 341 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a haa+t+s F+++YnPr+s+seFv++v+k++kal ++v vGmRf+m fete+ss rr++Gt++g++dldp+rWp+S WrsLk Sphfalx0299s0001.1.p 259 ANHAATTNSRFTIFYNPRQSPSEFVIPVAKYQKALLTQVNVGMRFRMVFETEESSVRRYMGTITGIEDLDPIRWPKSDWRSLK 341 679******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-49 | 122 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.5E-42 | 125 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.40E-22 | 132 | 233 | No hit | No description |
SMART | SM01019 | 1.2E-22 | 133 | 235 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.915 | 133 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-22 | 133 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.0E-35 | 259 | 341 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.7E-8 | 739 | 829 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.682 | 741 | 825 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.18E-7 | 761 | 820 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MYSCPPMRLS ASSYSPPSMD QERRCLNSEL WHACAGPLVS LPPVGSCVVY FPQGHTEQVT 60 ASTQKELDAH IPNYPNLPSR LICLLDNVTL HADLETDEVY AQMTLIPLHA SQQKDPLLSE 120 DYSKPNKQPT EYFCKILTAS DTSTHGGFSV PRRAAEKVFP PLDYSQQPPA QELIARDLHD 180 QEWHFRHIYR GQPRRHLLTT GWSVFVSAKR LQAGDSVLFI RDDKGQLLLG IRRVHRQQTI 240 MPSSVLSSDS MHIGVLAAAN HAATTNSRFT IFYNPRQSPS EFVIPVAKYQ KALLTQVNVG 300 MRFRMVFETE ESSVRRYMGT ITGIEDLDPI RWPKSDWRSL KVGWDESTAG ERQQRVSIWD 360 IEPLTTPFLL CPPPLALRSK RTRESRGEEE DIDSLMKKSQ MWADGSDSLG TLNFRNPAME 420 SPWMQPSQQR VDSAVASSQN ELYYRALAAE ALQEIRTGDS KQLHHPLSSP QLHFHQQQSQ 480 AQQQQNQPST HRMVDAPGPL LQLSFSGPQS QMNLACSMRQ ASSYCESDLQ MGSSSFSLQG 540 MLGRAQSNSP ISENDQFFNM LPPSQSTMQN PIHGSDLMVQ DQQVSAPWFS TIRTQNQADP 600 GQPMLPTRMG QVDTSPSPRV TGPPFTHPQH SETGVQPGLA ELPPLGFRQN DQDVDQLQAD 660 RSNLLFGQPL SASAPLTSTS KTKEQQNTFP GNNILPGSFC QPATADIASG VVGSGGLDDN 720 GLYQRNSAAA WPSMQAAQPL RTFTKVHKLG MPGRSLDIRN FHNYVELRSE LARMFNLEGL 780 LDETVKSGWQ LVFVDHENDT LLVGDDPWEE FVSCVRSIKI LSPSEVSQMT QDQLEILDTA 840 PTQQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 26 | 362 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401004.1 | 0.0 | auxin response factor 6-like | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A2K1J4P6 | 0.0 | A0A2K1J4P6_PHYPA; Auxin response factor | ||||
STRING | PP1S163_119V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0299s0001.1.p |
Publications ? help Back to Top | |||
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