PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0294s0018.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 964aa    MW: 106349 Da    PI: 9.288
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0294s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05406430123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           y C+   C+ksFs +s LkrH   H
  Sphfalx0294s0018.1.p 406 YACHyeGCNKSFSERSKLKRHFLIH 430
                           89*******************8877 PP
2zf-C2H2120.00065439460423
                           T..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   4 p..dCgksFsrksnLkrHirtH 23 
                               Cgk Fs   nL++H +tH
  Sphfalx0294s0018.1.p 439 LfeGCGKAFSLDFNLRSHTKTH 460
                           5558*****************9 PP
3zf-C2H211.80.00073467490323
                           ET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                           Cp  +C+k++ + + L+ Hi + H
  Sphfalx0294s0018.1.p 467 CPyaNCDKHYCQEYKLRAHIAKvH 490
                           9999****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.13E-5377430No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5377402IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.806377401IPR007087Zinc finger, C2H2
SMARTSM003550.0085377401IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280379401IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-12404428IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.687406435IPR007087Zinc finger, C2H2
SMARTSM003559.7E-4406430IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280408430IPR007087Zinc finger, C2H2
SuperFamilySSF576671.87E-13416463No hitNo description
Gene3DG3DSA:3.30.160.601.9E-19429463IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.508436465IPR007087Zinc finger, C2H2
SMARTSM003550.38436460IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280438460IPR007087Zinc finger, C2H2
SMARTSM003550.45465490IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280467490IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 964 aa     Download sequence    Send to blast
MDTARLRRDK SLLEVAQNSI EDEFDNGSGS PGEGSQEQGL ERSSEREDVG NVGTRSRLKS  60
GKYNADLEVK EGANNDGKER DNLPQCSSGN EQSEDDAGLV QKQRESILTQ STSLTRTRAG  120
VKKRTVRHIV VEDGAENRNE QGGEDGGSGT MVVEGACQRG EEDSKLIPKL SDKKYREAAA  180
EKKTGIRTSS RCPGDHEPGK KSFKGCQAPP KIEAGQDFSR FKSKKLVKHP LRPNVQKMSL  240
PDSTITPKLE EPRAVRLNRG IKRRFPGDES DDSVPKCIRV RTIASMCGNT SQPIEDDELS  300
TEEVLCKTVP TKKRGRPRKH VYVEELSEKE EEGEKQVPLS SLKRQMVATE GLGSQSSKRL  360
CKNGSGTSPP SRRSPLFVCN VEGCKRKFKE EPALYAHARV HGDRAYACHY EGCNKSFSER  420
SKLKRHFLIH TGEKPFLCLF EGCGKAFSLD FNLRSHTKTH TGDYNECPYA NCDKHYCQEY  480
KLRAHIAKVH SKSPRGTRKM ATLENIQHRS HTQHVKAKAK RTNMLAAITV QSVKLKEAKE  540
GRVHRIAELE RQRRREAAEL ARIEQDLGKL ERKQRQLKEG QKDCAIVTSL SLSGGEDEED  600
KGEEIAPSSS TATHTSSSGE EQSRLSNLPG TEYMAMGEGK EILMVSHKLP KTDQGASLVM  660
ASSETQLLNS QQPETIVSLT PLLWLQGTPP NQGHLAGQPG SHAYLRTQRP MSMSELRAIQ  720
NSAKPIGSSH ATSGAANPGG FRMIENSSDQ HKHTSGDVLR QGESSHAGIQ HLNATKVRKL  780
EAHRKVSHEA TKLKMQTDRD LARCDKGAVQ SSASSSKSDK NVQIAVIGKG SIKKLEGEDT  840
RIQKQKRTRD CHLSTADQAF VSLTPLLLST DNRFSPTDAR FLAASETLPS AMQRTIWGSQ  900
QNKQEEAVKV SFSGRNSVAN EVSCSINVVS TYCTQNGGFS AEQSFEPSAA QLFTYQEQPR  960
LVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-293794938120PROTEIN (YY1 ZINC FINGER DOMAIN)
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258263RGIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.28e-41C2H2 family protein