PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0287s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 374aa MW: 40519.7 Da PI: 6.2319 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.6 | 4e-06 | 3 | 43 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 + C+ ++ + +C+ + +lC C + H g H+ Sphfalx0287s0014.1.p 3 KPCDACHASSAVVYCRADAAYLCVGCDGKVH-GanklasrHE 43 67*****999*****************9999.4466666676 PP | |||||||
2 | zf-B_box | 21.2 | 5.8e-07 | 45 | 89 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e ++ C+ + lC +C + +H+ H++v Sphfalx0287s0014.1.p 45 VWMCEVCELAPAVVTCKADAAALCFSCDTDIHSAnplarrHERVA 89 689*****************************6688888898875 PP | |||||||
3 | CCT | 71.7 | 1.8e-24 | 308 | 351 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RYkeKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++ Sphfalx0287s0014.1.p 308 REARVMRYKEKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 351 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.9E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.471 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.80E-6 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.855 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.0E-5 | 45 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.25E-6 | 46 | 88 | No hit | No description |
SMART | SM00336 | 2.6E-8 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.7E-18 | 308 | 350 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.777 | 308 | 350 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 374 aa Download sequence Send to blast |
MPKPCDACHA SSAVVYCRAD AAYLCVGCDG KVHGANKLAS RHERVWMCEV CELAPAVVTC 60 KADAAALCFS CDTDIHSANP LARRHERVAV VPFFECPNVA KMVHINAMNV AVPVIDCCDV 120 IKADNETSAV EASWLLQNPK RPGEALMKDD DLGLLSSSYL ERQYSAKSQK EKFKTKAELY 180 EAADLFPDVD PYLDLDYAAA MGGSTTQVGA DSLVPVHNSS STADNHGQPS LIHAQSHVTS 240 YSELPQDNGY NHGASSLSHS ISSSSIDAGV VPDSSLSDIS PPTEGSPGML EYPAPTVPAG 300 GPDETMAREA RVMRYKEKRK NRKFEKTIRY ASRKAYAESR PRIKGRFAKR TDSDTEFMFP 360 MVPDVSFGVV PTY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369143.1 | 1e-129 | zinc finger protein CONSTANS-LIKE 4-like | ||||
TrEMBL | Q5H7P0 | 1e-127 | Q5H7P0_PHYPA; CONSTANS-like 1 | ||||
STRING | PP1S371_27V6.1 | 1e-128 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-80 | CONSTANS-like 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0287s0014.1.p |