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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sphfalx0286s0010.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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| Family | C3H | ||||||||
| Protein Properties | Length: 255aa MW: 28944.3 Da PI: 11.2163 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 23 | 1.4e-07 | 8 | 31 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC f+r G C++ +C+FaHg
Sphfalx0286s0010.1.p 8 YKTKLCTLFQR-GNCPR-QSCSFAHG 31
9**********.*****.*******9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:4.10.1000.10 | 3.6E-12 | 5 | 37 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.14E-5 | 6 | 36 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.6E-4 | 7 | 32 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.582 | 7 | 33 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.2E-5 | 8 | 31 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 255 aa Download sequence Send to blast |
MGSSHDLYKT KLCTLFQRGN CPRQSCSFAH GDAELRRFSN PMAAAASGSR SPFNNGRIES 60 GYHNGDLRDR LERRRSTPIR RHSPPFRGRP AAHYDRMLSP PDRGGRSRTR TPPIRPRLSR 120 SPSPQRSPPI ARRRESKRPR TAALEPHFSD VSGDVRGTED VNGEGDFKQL GPAAERMSSP 180 IPPRNPRDTH DTRDTLEDQH SLEKKIRETS NLSTQNQELE SRLAGANEDY RRLGSKLKLF 240 VKIYARYIHA QDVVQ |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G21810.1 | 3e-11 | C3H family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Sphfalx0286s0010.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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