PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0285s0015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | HB-other | ||||||||
Protein Properties | Length: 296aa MW: 33068.2 Da PI: 7.8417 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 5.8e-18 | 21 | 74 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 R++ ++ ql Le++++ ++yps+e r++L+kk+gL+e+q +vWF+ rR k+++ Sphfalx0285s0015.1.p 21 RRKKSPLQLGLLEKVYADDKYPSEEVRTDLSKKIGLSEKQLQVWFKHRRHKDRR 74 88999***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.27E-15 | 9 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.244 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-17 | 17 | 79 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-16 | 21 | 74 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.2E-15 | 21 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.97E-16 | 21 | 74 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MASDDSSPEQ SPEKQQKGIA RRKKSPLQLG LLEKVYADDK YPSEEVRTDL SKKIGLSEKQ 60 LQVWFKHRRH KDRRDGIDDD KLTLYASRHK ADADSEELPS TKRGEIDLNS REDDKSEDGY 120 PAAVLAEEQD DDVLIVNKMN GIDVNEGDFE EFEKPKATTK KKIASGLKEQ PRKPPLKPTS 180 LKSKVISKVD ALELAAVKAV ESQLNGPLRE DGPPLGFEFD SPPPGAFEEF MSTEGPYRAN 240 VRHEHRFKSL NGRAALEGKW GKDSVSLEKK KRKLGDLYGA RLPAGQPVYR GGFQL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 74 | RRHKDRRD |
2 | 268 | 273 | KKKRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 1e-27 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0285s0015.1.p |