PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0285s0014.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 617aa MW: 66382.5 Da PI: 8.1551

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0285s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.5e-09	319	363	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h rEr+RRd++ s+f+ L + lP++ K + ++i+ eY+k+L Sphfalx0285s0014.1.p 319 HIVRERQRRDDMASKFAVLESFLPPS-----SKRDRSAIVSDSAEYVKNL 363 899*******************98.....69*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.877	314	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-10	318	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.46E-11	319	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.88E-7	319	367	No hit	No description
Pfam	PF00010	5.8E-6	319	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-5	320	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence Send to blast
MEYHANGIRP SSGRFDRHLH SGDFSTSYSN PSTLDSYFVK NSGGLEMVIG GSGQLRDICQ 60 TPARTAAADH HHGCSWPESA ASSSLQWAKM QQQLQQHQGE PFSYNVAATS GSAAASLGAT 120 AMSLMTEAQA DRVVGDRRSL GLVEATAALQ PFPLDREMPG SYSPVQFGSD AGRFLTHELP 180 FRQQMATPFP PSTTVPLALV QSLLGTTDHD GGVGTTVPSP AIVESSSASQ YRITDQQLVG 240 AAVDRMGTSA GVGTAGLDSP SVTTGLKRIR DRSSDKAALL HHHHRKSKAE KNDLGLPPGA 300 AAAAGKQKFP SSSLEQPEHI VRERQRRDDM ASKFAVLESF LPPSSKRDRS AIVSDSAEYV 360 KNLHHRINVL RQRRMELMNV AASSPPAATS HGNATTQDQH HHPNSNNNST RSRPLALPPS 420 PSAIQMRCST SSLDAAIGGS AAAAPRCLSK QVVQQQYSSN KMLQDQSYDP QAAAAAACHQ 480 VDSKKFSNMT SVSRSFPTEE ELSESNIELK SCVEKLEVFV DLPHKLVIHM MCRPQPKFQS 540 NMLQGMESLQ LEVLQSNISR VAFGHVICII SAKPWDGSAY DAMCKDRIIV AVNCALGPDS 600 SQKQHQTKQG PQLPLP*

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence Send to blast

MEYHANGIRP SSGRFDRHLH SGDFSTSYSN PSTLDSYFVK NSGGLEMVIG GSGQLRDICQ  60
TPARTAAADH HHGCSWPESA ASSSLQWAKM QQQLQQHQGE PFSYNVAATS GSAAASLGAT  120
AMSLMTEAQA DRVVGDRRSL GLVEATAALQ PFPLDREMPG SYSPVQFGSD AGRFLTHELP  180
FRQQMATPFP PSTTVPLALV QSLLGTTDHD GGVGTTVPSP AIVESSSASQ YRITDQQLVG  240
AAVDRMGTSA GVGTAGLDSP SVTTGLKRIR DRSSDKAALL HHHHRKSKAE KNDLGLPPGA  300
AAAAGKQKFP SSSLEQPEHI VRERQRRDDM ASKFAVLESF LPPSSKRDRS AIVSDSAEYV  360
KNLHHRINVL RQRRMELMNV AASSPPAATS HGNATTQDQH HHPNSNNNST RSRPLALPPS  420
PSAIQMRCST SSLDAAIGGS AAAAPRCLSK QVVQQQYSSN KMLQDQSYDP QAAAAAACHQ  480
VDSKKFSNMT SVSRSFPTEE ELSESNIELK SCVEKLEVFV DLPHKLVIHM MCRPQPKFQS  540
NMLQGMESLQ LEVLQSNISR VAFGHVICII SAKPWDGSAY DAMCKDRIIV AVNCALGPDS  600
SQKQHQTKQG PQLPLP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46510.1	7e-08	ABA-inducible BHLH-type transcription factor

Link Out ? help Back to Top
Phytozome	Sphfalx0285s0014.1.p