PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0279s0018.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 369aa MW: 39753.1 Da PI: 5.8634

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0279s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.2	3.6e-38	46	106	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ ++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrnvP Ggg+rknk+++ Sphfalx0279s0018.1.p 46 PDQVVACPRCQSLNTKFCYYNNYSLTQPRHFCKNCRRYWTAGGTLRNVPFGGGCRKNKRAK 106 68899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	44	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.2E-33	47	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MHSVARMAME PSSSGNEEQQ QQQQETKASQ LLAQHALQER HHLKPPDQVV ACPRCQSLNT 60 KFCYYNNYSL TQPRHFCKNC RRYWTAGGTL RNVPFGGGCR KNKRAKRRNM DGQSSSGTEN 120 SETDHSMAAA EQHTLLGSSS AGLFGSEDGM AFVTHQEGTW SQPQGTSHSG EGGLAFTQSC 180 QGLRIGQHSQ PFDSGIMSLG MFSSIRPDAG AALSMHNTSQ QVHGGDLGAF FDNSPYGGAG 240 ALAALSEAHG SYDHTDGGDE ASSYASGEVW GNLQHHPKQE VLWGQDQESI EGSLDIDRQQ 300 DKAKFPTPSL PPAQGLDDEE TAAQPEAWQR SASQGGMSHY ETSSDSSFWS NPGWPPGDLH 360 VLHGSGET*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MHSVARMAME PSSSGNEEQQ QQQQETKASQ LLAQHALQER HHLKPPDQVV ACPRCQSLNT  60
KFCYYNNYSL TQPRHFCKNC RRYWTAGGTL RNVPFGGGCR KNKRAKRRNM DGQSSSGTEN  120
SETDHSMAAA EQHTLLGSSS AGLFGSEDGM AFVTHQEGTW SQPQGTSHSG EGGLAFTQSC  180
QGLRIGQHSQ PFDSGIMSLG MFSSIRPDAG AALSMHNTSQ QVHGGDLGAF FDNSPYGGAG  240
ALAALSEAHG SYDHTDGGDE ASSYASGEVW GNLQHHPKQE VLWGQDQESI EGSLDIDRQQ  300
DKAKFPTPSL PPAQGLDDEE TAAQPEAWQR SASQGGMSHY ETSSDSSFWS NPGWPPGDLH  360
VLHGSGET*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-33	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Sphfalx0279s0018.1.p