PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0274s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 28787.2 Da PI: 8.0927 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00045 | 155 | 174 | 3 | 22 |
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C+ Cg sF + + +H+r+ Sphfalx0274s0024.1.p 155 CSTCGPSFEDMAKYSSHLRK 174 ******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02992 | 1.2E-45 | 11 | 195 | IPR004242 | Transposon, En/Spm-like |
PROSITE profile | PS50157 | 8.663 | 153 | 185 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MYRCTDLAEL MVWHKEHRSE PGVMRLPIDS PAHKHVGSTW PEFERDPRHG RPTSVWPVVV 60 MNYNLPPWLS MKKGFLLLSL IIPGPSKVKN LDTYLALVVD ELKTLWDGVW AYDGRKTTGG 120 IPRVFKLRAI YMWTMHDYPG FGFVSGLQTQ GYKACSTCGP SFEDMAKYSS HLRKIVYLGH 180 TKFLPLGHDM KSDPLLFSSF DMPYGDERDI PEATTFAYWR DVANRVIDLN DSMVFEGSGL 240 TRWGIFNSLP Y* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0274s0024.1.p |