PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0274s0008.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 411aa    MW: 47339.3 Da    PI: 6.3141
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0274s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05150173123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           y+C++Cg+ ++++  Lk+H +  H
  Sphfalx0274s0008.1.p 150 YVCNYCGRKCKTQLALKKHFKQlH 173
                           9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10109.5E-867150IPR029060PIN domain-like
PROSITE profilePS5015710.97150178IPR007087Zinc finger, C2H2
SMARTSM003550.0024150173IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152173IPR007087Zinc finger, C2H2
CDDcd061673.72E-10179289No hitNo description
PfamPF019365.4E-6226294IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10109.5E-8235295IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAAFQASFLS HKPCEGLRIP FVFRRHHLLP KTHLQFKSIC VVCSVSEISQ RERFSPDDVL  60
QEEEERNRRR RSVAVFWDLD NKPPKAVRPY DAALRLRDTA AEFGNVVDMV AYANRHAFIY  120
LPQWVREERQ EKKKLDVLES KGLVKPLEPY VCNYCGRKCK TQLALKKHFK QLHERERSKR  180
LTHLSHLKGK RRIKYKEKLA DKEERYNDVA REILVPKVGY GLAGDLKRAG VFVKTVEDRP  240
QAADEALIKH MTHYIHRGLE CLCLVSDDSD FTNVLRLARL HRLQIIVVGE TMTLSRHADI  300
SFSWEEVATG RALGRAQGLA SEAFEDQSNE EALRHEILDD SDLYIAELQD DSDQNTGGTS  360
KDLGLKSGFR VSAFSEEEGG EWDSELHSVE EANDQPFDYP DWWDEDEDSE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368126.11e-133uncharacterized protein LOC112278710
TrEMBLA0A2K1L2881e-132A0A2K1L288_PHYPA; Uncharacterized protein
STRINGPP1S343_27V6.11e-132(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.12e-91C2H2-like zinc finger protein