PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0270s0001.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bZIP
Protein Properties Length: 461aa    MW: 50361.6 Da    PI: 6.916
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0270s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.11.4e-11288346563
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l +l+k ++ l++e+
  Sphfalx0270s0001.1.p 288 KRAKRILANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTMLQKDSSGLTAEN 346
                           9***************************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.9E-17284348IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.082286349IPR004827Basic-leucine zipper domain
PfamPF001703.4E-10288346IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.1E-11288342No hitNo description
SuperFamilySSF579593.24E-11288338No hitNo description
CDDcd147033.51E-25289338No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDGLGDGYEA FVERLQSDFA ATSAAKSSGT NTNSNVATHP PHPSQSQRHQ SRYVGYPSPT  60
HAFTVKRETS PSVSESSTRT RDSYSLDVPM QDVTSPGPSS ASGPGRLPTP AHNFSNDVNR  120
MPDTPPRQRG HRRAQSEIAF RLPEDVSFER DLGFHCSEMP ALSDDTEDLF SMYIDMEQIN  180
SFSATSAISG GKASGDRGIV PLVPPYHSMS PSMDGVPAVS NGGRSSIAIA SGSSIASDIR  240
RARHQHSNSM DGSTSFKHDL LTGEFDGVDV KKVMSSDKLA DIALIDPKRA KRILANRQSA  300
ARSKERKMRY ISELERKVQT LQTEATTLSA QLTMLQKDSS GLTAENSELK LRLQSMEQQA  360
QLRDALNDAL REEVQRLKMA TGQLNNSSGQ NLGGQHFYHL QSQPLNSQQL QQLQQAQTGL  420
DNQQQIHSEF LQHDTLHLSS SFIKPEGPHN AVNHTSSTSF *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356505.10.0transcription factor RF2a-like
RefseqXP_024356506.10.0transcription factor RF2a-like
SwissprotQ040889e-85POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A2R6XND50.0A0A2R6XND5_MARPO; Uncharacterized protein
STRINGPP1S20_118V6.10.0(Physcomitrella patens)
STRINGPP1S20_119V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.17e-88bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]