PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0268s0002.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | Trihelix | ||||||||
Protein Properties | Length: 246aa MW: 27737.9 Da PI: 5.8911 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.8 | 7.8e-15 | 28 | 113 | 2 | 79 |
trihelix 2 WtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstc 79 W e l L a+r +e++++ +++++W++++++m+e+gf er Ck kwenl ++k +k++e++ +e + Sphfalx0268s0002.4.p 28 WDVAEMLSLAHAKRAEWEKYEQVTvreraemSAQQKWDAIGQYMQEHGFpERDGRGCKVKWENLLSDFKGVKDWENRSGNEGPAYW 113 9999**********9999999753444555699****************99*************************9655554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.3E-10 | 26 | 116 | No hit | No description |
PROSITE profile | PS50090 | 7.619 | 36 | 92 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEEEALATSG QASKARLRLE KRSRARNWDV AEMLSLAHAK RAEWEKYEQV TVRERAEMSA 60 QQKWDAIGQY MQEHGFPERD GRGCKVKWEN LLSDFKGVKD WENRSGNEGP AYWAMSSNER 120 QAEGLPRQFA QELFDVLDNL YSTRQLPEDE FPESPTSTGL NTGLDNVGSG DRELGSSHRK 180 RKGVFANGVE KSIRETRDTC VAGIERERAL IGKERMEDDR ADRRALIGVL ATLASACDKI 240 ATKLN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 7e-15 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0268s0002.4.p |