PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0265s0024.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 651aa    MW: 72495 Da    PI: 8.1977
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0265s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.68.7e-08494515426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            +C ff+r G Ck G+rC+F H+
  Sphfalx0265s0024.1.p 494 QPCYFFQR-GRCKKGSRCHFVHD 515
                           68**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.058220242IPR007087Zinc finger, C2H2
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
PfamPF104531.3E-10287325IPR019496Nuclear fragile X mental retardation-interacting protein 1, conserved domain
SMARTSM003564.1E-5490516IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.361490517IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5490515IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-5494515IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-6495520IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000491Biological Processsmall nucleolar ribonucleoprotein complex assembly
GO:0005634Cellular Componentnucleus
GO:0048046Cellular Componentapoplast
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MRPAQRNMYG QPAGMRYSAS PSHLHPPLQP GHGRGHALSQ GLDQAHSHMQ QHSPIQPRHG  60
RGHALSQGLD QAHSHMQPQL YSSMPSMGIP IGNAGMPFQY DYTPSSAARE ASQQPWSASF  120
LRTSRPQWEP RVDLPGPSWQ ENGPFMNPNA HHTKPLHAYH ILPESSEDRV FGNVRSIDSG  180
MGRGRGIFGG RHVSMSKDPH PFSCQPFEAP PVVVLQAKSL RCEPCEKTFD VLSQMKAHMS  240
SHVLCDEPSC SFSASGKMVK EHKQMVHGKK NASLSMKAIK DAALCSKESE DEVRRWREER  300
KRNYPTTSNI KRKAEDRQGR KARGELMDED ARLRRQRLKE VLQRQAELGV PVAEIPSYYI  360
SDRYGRDHSK LSSNNRNGAE NVAPAQNTLS NQMSTQVNGV KRECSPRAET CETQTEEKGE  420
KPFKIARIDL DPPDTVNGSN SLPGLSVFEN SSGEISNSTN ENEFTDAVLG SGALSDLSNQ  480
KSTGLKPTHR TSEQPCYFFQ RGRCKKGSRC HFVHDRQQRR KGGEERANMR GKDRQKGASS  540
SILRPSLLSK LLDSSIRADK SRILECLRFF VKNSFLLEWP TRPLEFSNWL EEDVGGNIPE  600
QEASPPLDVL AADAALVEAI DVNGVEIEEF DAGNWEPVTV GQPESSNEEM *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-