PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0265s0010.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Protein Properties

Length: 571aa MW: 64922 Da PI: 9.0253

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0265s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.7	1.2e-14	78	165	7	97
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 p +v+ ++ l++p +f ++++ + +++ + l d sg++W + r + ++ +t+GW+eF a +L +gD++vF+l ++++ ++v+ Sphfalx0265s0010.1.p 78 PFHVHGRAFLRFPVTFGKHFM--PMKTVPMHLIDASGNQWPMVW-LRDNETHMGFTRGWREFSLAEDLSDGDVCVFELLDTTDLMFRVH 163 5578888999*****6665..346678***********.466666788*********************999899988888 PP EE CS B3 96 vf 97 vf Sphfalx0265s0010.1.p 164 VF 165 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.92E-21	65	167	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-18	66	167	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.3E-11	72	168	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.661	72	168	IPR003340	B3 DNA binding domain
CDD	cd10017	1.70E-19	76	166	No hit	No description
Pfam	PF02362	4.7E-12	77	165	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MHTDVAYRHS FQARSTSNAQ NIQPMINQAG ELHRGHDKVA RHLILYPGLV MYREKAMELG 60 RFTVLKSDKP CHLVLLRPFH VHGRAFLRFP VTFGKHFMPM KTVPMHLIDA SGNQWPMVWL 120 RDNETHMGFT RGWREFSLAE DLSDGDVCVF ELLDTTDLMF RVHVFCTERK SPSSQKKDSS 180 NQHDHHHRAN ARAKTLQLQD DNHCNNPYNE VLLYSSGKKR ELSGGINMHV GAEQDKETAA 240 SQLLHTSSPS LKTLYNAFLR LPPPTDASKK DAMNSREREG NLPEEMTCQK ASTTSLVLVM 300 EDKVKTSESL QVHSSSNSER CCKCSKRHKL EPGTECETYM EPGIPQDDPT QNLECDGELL 360 FSACNTGIAK QDDRPGKLEP HHWGATNVDP VFQEQKLQEC HQSVTMQRAK PASNGSTGEV 420 KKDSEISAQW WTRTCKPNKQ CLRWESEMSL LRCRKKPGAS WRRLTGSNTT LSRNRQASSL 480 LQVRVRKQLL FVGSKRLPVT QLQREAARDA ACALKTMNPS VVVVMKKSNV YRNFIVEHRI 540 LLLSIPEHPQ PDVLCFFFGQ EHTILLRHAK *

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MHTDVAYRHS FQARSTSNAQ NIQPMINQAG ELHRGHDKVA RHLILYPGLV MYREKAMELG  60
RFTVLKSDKP CHLVLLRPFH VHGRAFLRFP VTFGKHFMPM KTVPMHLIDA SGNQWPMVWL  120
RDNETHMGFT RGWREFSLAE DLSDGDVCVF ELLDTTDLMF RVHVFCTERK SPSSQKKDSS  180
NQHDHHHRAN ARAKTLQLQD DNHCNNPYNE VLLYSSGKKR ELSGGINMHV GAEQDKETAA  240
SQLLHTSSPS LKTLYNAFLR LPPPTDASKK DAMNSREREG NLPEEMTCQK ASTTSLVLVM  300
EDKVKTSESL QVHSSSNSER CCKCSKRHKL EPGTECETYM EPGIPQDDPT QNLECDGELL  360
FSACNTGIAK QDDRPGKLEP HHWGATNVDP VFQEQKLQEC HQSVTMQRAK PASNGSTGEV  420
KKDSEISAQW WTRTCKPNKQ CLRWESEMSL LRCRKKPGAS WRRLTGSNTT LSRNRQASSL  480
LQVRVRKQLL FVGSKRLPVT QLQREAARDA ACALKTMNPS VVVVMKKSNV YRNFIVEHRI  540
LLLSIPEHPQ PDVLCFFFGQ EHTILLRHAK *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	7e-12	related to vernalization1 1

Link Out ? help Back to Top
Phytozome	Sphfalx0265s0010.1.p