PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0265s0003.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 454aa    MW: 51140.9 Da    PI: 10.0251
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0265s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.66.8e-11114202397
                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                            v+++s+v ++ ++ +p  f ++h   + e+++l+l+d  g++    l     sg++ l +GW++F   + L+egD++vF+l+ ++ ++
  Sphfalx0265s0003.1.p 114 VVMKKSNVYRNFIVKIPPAFRQAHI--PCEGTDLKLQDAVGQQTHAFL-----SGEV-LMGGWQQFSLHHLLEEGDTCVFELItNKtED 194
                           57899***************98883..446779**********99999.....6665.555********************99444577 PP

                           E..EEEEE CS
                    B3  90 felvvkvf 97 
                            +++v++f
  Sphfalx0265s0003.1.p 195 LTFMVHIF 202
                           77777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-16105203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-17106203IPR015300DNA-binding pseudobarrel domain
CDDcd100177.92E-16110203No hitNo description
SMARTSM010190.0079112205IPR003340B3 DNA binding domain
PROSITE profilePS508639.347112205IPR003340B3 DNA binding domain
PfamPF023621.8E-8114202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MPASNGSTAE VKKNSEISAQ WWTRTCKPDK QCLRWQLEMS SLRCRKKPGA SWRRLTGSNT  60
SLSRNSQASS LLQARVRKQL LFVGSKQLPV TQLQREAARD AACSLETMNP SVVVVMKKSN  120
VYRNFIVKIP PAFRQAHIPC EGTDLKLQDA VGQQTHAFLS GEVLMGGWQQ FSLHHLLEEG  180
DTCVFELITN KTEDLTFMVH IFCVVEVDHS KVQWQDHSMI LSRGKCWNNE MHLIKCDKKM  240
EQDSSLAFSE TKNLEDEDAT GCLFPGLGST NALCIAVQKC MVRHNKPQAA KSSALRERLA  300
YRLWSSSSHP QHTAKTNDAS SPAKETTTTP PTICDSRVRG TLEEPAKVNQ AARSSNHFLT  360
RITVPSYSCR LMSRRKRLVI KSPNNQEKVT TQTCKLLKGW LCHSLQMMMM MMGREREFTT  420
EWCVSSRSVS LRIRNTTSLS LTGLSYKVTK MGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.17e-13related to vernalization1 1