PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0264s0019.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 298aa MW: 35567.9 Da PI: 8.5871

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0264s0019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.8	4.1e-25	52	133	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +e+++ i++r e+e+++ ++k++k+lWe ++ km+e+gf+rs+ qCk+kw+nl +ryk +++e ++ ++cp+f++l+ Sphfalx0264s0019.1.p 52 QWGYHETKEFIAIRAELEKDFTQTKRNKTLWELIAGKMKEKGFRRSADQCKCKWKNLVNRYKGKETSEPDN----GRQCPFFEELD 133 7*****************************************************************984....668****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.818	45	109	IPR017877	Myb-like domain
CDD	cd12203	5.50E-27	51	116	No hit	No description
Pfam	PF13837	4.5E-23	52	134	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MAYTSRPPPP PGLMGDNLTI MTSMPLQEPQ EVGLDDALAP GQSRKKDDRI PQWGYHETKE 60 FIAIRAELEK DFTQTKRNKT LWELIAGKMK EKGFRRSADQ CKCKWKNLVN RYKGKETSEP 120 DNGRQCPFFE ELDGIFKERA KNMDRLMLES ETGFRKRSKQ GKFSDEDNDE EYNDEEDSED 180 ERAVRRKKRK SDKEKQRQTA DRCRASSMKE VLDDFFQHQQ KIQEQWRYAA QKRQQERLFR 240 ELEWKESMEK LEQQRRAQEH AWREHEEMRR VREEARAEKR DALFAALINK FFQENGS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024381970.1	1e-114	trihelix transcription factor GT-3b-like
TrEMBL	A0A2K1K864	1e-112	A0A2K1K864_PHYPA; Uncharacterized protein
STRING	PP1S285_47V6.1	1e-113	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	6e-37	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0264s0019.1.p