PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0261s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 25821.8 Da PI: 8.0391 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.2e-18 | 6 | 54 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +y+GVr+++ +g+Wv+eIr+p+ ++r++lg+f tae+Aa a+++a++ + Sphfalx0261s0009.1.p 6 RYRGVRQRH-WGSWVSEIRHPVL---KTRVWLGTFETAEDAATAYDEAARLMC 54 69******9.**********744...5**********************8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.53E-31 | 5 | 63 | No hit | No description |
SMART | SM00380 | 5.3E-38 | 6 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-10 | 6 | 55 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.666 | 6 | 63 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-33 | 6 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-20 | 6 | 64 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRPQRYRGV RQRHWGSWVS EIRHPVLKTR VWLGTFETAE DAATAYDEAA RLMCGNRART 60 NFPFDPNAPY TPKTQMLSAT LSAKLHRWYL ASQDKNNVLQ LQQQATPGAK NNDKSSSCST 120 MEQSLTCLCL DAEQSNLGIW QKKTGRQAEA NWLRKVQFDS CNSNSSPLLK PDQPAGAAAG 180 SQISSYMSEE DKFASEMIEE LLGYNSAGQF QLMSPALSDS SCCSSSTSSL TASS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-18 | 5 | 64 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-18 | 2 | 68 | 1 | 68 | ATERF1 |
3gcc_A | 8e-18 | 2 | 68 | 1 | 68 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386105.1 | 1e-96 | ethylene-responsive transcription factor ERF003-like | ||||
TrEMBL | A9S984 | 3e-95 | A9S984_PHYPA; Predicted protein | ||||
STRING | PP1S79_25V6.1 | 4e-93 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 2e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0261s0009.1.p |