PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0259s0024.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NF-YC
Protein Properties Length: 247aa    MW: 27826.9 Da    PI: 5.2834
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0259s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC168.39.3e-53321361101
                 NF-YC   1 qlksfwekq...iek.atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                           ql++fw  q   ie+ a++fknh+lPlarik+i+kadedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+k+di+aa++r
  Sphfalx0259s0024.1.p  32 QLQMFWLGQmreIEQaANEFKNHQLPLARIKRIVKADEDVRMISAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQKNDITAAIAR 120
                           89****9996665652578********************************************************************** PP

                 NF-YC  86 tdifdflvdivprdel 101
                           tdifdflvdivp+del
  Sphfalx0259s0024.1.p 121 TDIFDFLVDIVPQDEL 136
                           *************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.54E-3215127IPR009072Histone-fold
PfamPF008082.5E-2055118IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.9E-3656133IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
GQSPEAVAYP TALAQQQQQL GYQHLQQQHQ HQLQMFWLGQ MREIEQAANE FKNHQLPLAR  60
IKRIVKADED VRMISAEAPV LFAKACEMFI LELTLRSWIH TEENKRRTLQ KNDITAAIAR  120
TDIFDFLVDI VPQDELSKED GLAAATAGMI PRGIMPVANP PVVFFLHQQP LAAGLQQEAP  180
AATILSQQQE EANMTLSSAL LLARPTEMVM DPTLDQQQQQ PFVIPQKPMQ QLWQQHMLPN  240
SQLGIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5138133195NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105111RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386834.15e-70nuclear transcription factor Y subunit C-2-like
RefseqXP_024386835.15e-70nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG77e-63NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A2R6XQY94e-71A0A2R6XQY9_MARPO; Uncharacterized protein
STRINGPP1S51_318V6.12e-69(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-63nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]