PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0259s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | NF-YC | ||||||||
Protein Properties | Length: 247aa MW: 27826.9 Da PI: 5.2834 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 168.3 | 9.3e-53 | 32 | 136 | 1 | 101 |
NF-YC 1 qlksfwekq...iek.atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 ql++fw q ie+ a++fknh+lPlarik+i+kadedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+k+di+aa++r Sphfalx0259s0024.1.p 32 QLQMFWLGQmreIEQaANEFKNHQLPLARIKRIVKADEDVRMISAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQKNDITAAIAR 120 89****9996665652578********************************************************************** PP NF-YC 86 tdifdflvdivprdel 101 tdifdflvdivp+del Sphfalx0259s0024.1.p 121 TDIFDFLVDIVPQDEL 136 *************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.54E-32 | 15 | 127 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-20 | 55 | 118 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.9E-36 | 56 | 133 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
GQSPEAVAYP TALAQQQQQL GYQHLQQQHQ HQLQMFWLGQ MREIEQAANE FKNHQLPLAR 60 IKRIVKADED VRMISAEAPV LFAKACEMFI LELTLRSWIH TEENKRRTLQ KNDITAAIAR 120 TDIFDFLVDI VPQDELSKED GLAAATAGMI PRGIMPVANP PVVFFLHQQP LAAGLQQEAP 180 AATILSQQQE EANMTLSSAL LLARPTEMVM DPTLDQQQQQ PFVIPQKPMQ QLWQQHMLPN 240 SQLGIQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-51 | 38 | 133 | 1 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 111 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386834.1 | 5e-70 | nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_024386835.1 | 5e-70 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q8LCG7 | 7e-63 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A2R6XQY9 | 4e-71 | A0A2R6XQY9_MARPO; Uncharacterized protein | ||||
STRING | PP1S51_318V6.1 | 2e-69 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-63 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0259s0024.1.p |
Publications ? help Back to Top | |||
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