PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0257s0015.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 269aa MW: 28526.9 Da PI: 8.8728 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.7 | 1.1e-09 | 40 | 66 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f C++Gd+C+FaHg+ Sphfalx0257s0015.2.p 40 FKTRLCNRFDTAEGCRFGDKCHFAHGE 66 79***********************96 PP | |||||||
2 | zf-CCCH | 39.7 | 7.8e-13 | 234 | 258 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++++ GtC +GdrC+FaHg Sphfalx0257s0015.2.p 234 YKTKLCENYSQ-GTCTFGDRCHFAHG 258 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.685 | 39 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 39 | 66 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-8 | 40 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-13 | 40 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.6E-7 | 40 | 66 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.8E-15 | 137 | 216 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 3.1E-17 | 146 | 215 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.8E-13 | 146 | 216 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 15.011 | 147 | 211 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 3.6E-12 | 149 | 213 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.86E-14 | 151 | 211 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-17 | 231 | 265 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-9 | 232 | 263 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.924 | 233 | 260 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 233 | 259 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-10 | 234 | 258 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MITSMMALGT GRSLALSFSG TRKVVGGLGP DDQGANLGGF KTRLCNRFDT AEGCRFGDKC 60 HFAHGEIELR KSNNSSLLPL EHDVYSSVDH NRDRGYRGGG MYGADGGRFG TGRERDSGGR 120 FGGASGMGSY REPTPPGMAA AASFGASSTA KISIEASLAG AIIGKGGINA KQICHLTGAK 180 ISIREHESDP TLRNVEMEGS FEQIKQASQM VREVLMHRDN APSRPAGGVG SRNYKTKLCE 240 NYSQGTCTFG DRCHFAHGSA ELREPQRV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386818.1 | 1e-118 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_024386826.1 | 1e-118 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_024386832.1 | 1e-118 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_024386840.1 | 1e-118 | zinc finger CCCH domain-containing protein 14-like | ||||
TrEMBL | A0A2K1L959 | 1e-117 | A0A2K1L959_PHYPA; Uncharacterized protein | ||||
STRING | PP1S59_351V6.1 | 1e-118 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 5e-29 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0257s0015.2.p |