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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0257s0015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 346aa MW: 36417.5 Da PI: 8.6968 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.3 | 1.5e-09 | 117 | 143 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f C++Gd+C+FaHg+ Sphfalx0257s0015.1.p 117 FKTRLCNRFDTAEGCRFGDKCHFAHGE 143 79***********************96 PP | |||||||
2 | zf-CCCH | 39.3 | 1.1e-12 | 311 | 335 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++++ GtC +GdrC+FaHg Sphfalx0257s0015.1.p 311 YKTKLCENYSQ-GTCTFGDRCHFAHG 335 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.1 | 45 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.296 | 45 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 46 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-7 | 47 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 2.1 | 53 | 70 | No hit | No description |
SMART | SM00356 | 0.0012 | 116 | 143 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.685 | 116 | 144 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-8 | 117 | 147 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-13 | 117 | 148 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-6 | 117 | 143 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 6.04E-15 | 214 | 293 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.8E-13 | 223 | 293 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 4.9E-17 | 223 | 292 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 15.011 | 224 | 288 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 5.5E-12 | 226 | 290 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.15E-14 | 228 | 288 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-16 | 308 | 342 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-9 | 309 | 340 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 310 | 336 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.924 | 310 | 337 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-10 | 311 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MDPYGPPRKR PRPDQTAAAH NGVNGHGLGV TQAPADHDNK HDGSGNRTKP CTKFFSTSGC 60 PYGEGCHFLH FVPGGIQGVG LGALVPLSNV GSMGGTGTRK VVGGLGPDDQ GANLGGFKTR 120 LCNRFDTAEG CRFGDKCHFA HGEIELRKSN NSSLLPLEHD VYSSVDHNRD RGYRGGGMYG 180 ADGGRFGTGR ERDSGGRFGG ASGMGSYREP TPPGMAAAAS FGASSTAKIS IEASLAGAII 240 GKGGINAKQI CHLTGAKISI REHESDPTLR NVEMEGSFEQ IKQASQMVRE VLMHRDNAPS 300 RPAGGVGSRN YKTKLCENYS QGTCTFGDRC HFAHGSAELR EPQRV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 12 | KRPRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386818.1 | 1e-162 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_024386826.1 | 1e-162 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_024386832.1 | 1e-162 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_024386840.1 | 1e-162 | zinc finger CCCH domain-containing protein 14-like | ||||
TrEMBL | A0A2K1L959 | 1e-161 | A0A2K1L959_PHYPA; Uncharacterized protein | ||||
STRING | PP1S59_351V6.1 | 1e-162 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-28 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0257s0015.1.p |