PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0255s0023.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 297aa MW: 33848.6 Da PI: 9.3022

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0255s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.6	2.6e-26	49	128	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++aLi+ r+em++ ++++k++k+lWe++s+km+erg+ rsp++C++kw+nl k+ykk k ++k+ s+++ f++le Sphfalx0255s0023.1.p 49 WVQDEIKALIAYRKEMDNMFNTSKSNKHLWEQISQKMKERGYDRSPTMCTDKWRNLLKEYKKAKVQDKGT-----SRVACFKDLE 128 ****************************************************************999973.....3455788776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-5	40	111	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.42	41	105	IPR017877	Myb-like domain
SMART	SM00717	1.3E-5	45	107	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.17E-5	45	106	IPR009057	Homeodomain-like
CDD	cd12203	4.42E-30	47	112	No hit	No description
Pfam	PF13837	2.3E-19	48	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDVVINTVAP PPQQLPVSHQ LATMHQMLLA DTSGEDVEIK APKKRAETWV QDEIKALIAY 60 RKEMDNMFNT SKSNKHLWEQ ISQKMKERGY DRSPTMCTDK WRNLLKEYKK AKVQDKGTSR 120 VACFKDLEEL LSDRAKSIPY RSPAKLDALQ LPPKGGDGQL SRGKVIVVKF GDMTRRIRVD 180 GPFESIKESI KTSCGLRSRR PFWLEDDEGV IQPLSRNMPQ GQYSLNLDPG FTVKVCLYDE 240 SGRMTGTTEN RTLFTDDDFH EFLSRRGWSG LREVGGFRDF NSLEELRPGA VYQRAP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-37	43	126	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00666	PBM	Transfer from GSVIVG01007522001	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912857.1	1e-112	trihelix transcription factor GT-1 isoform X2
Swissprot	Q9FX53	6e-48	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A176WHM3	1e-129	A0A176WHM3_MARPO; Uncharacterized protein
TrEMBL	A0A2R6W1Q4	1e-129	A0A2R6W1Q4_MARPO; Uncharacterized protein
STRING	XP_010248872.1	1e-109	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.2	1e-104	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0255s0023.1.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]