PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0255s0012.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 707aa    MW: 75763.2 Da    PI: 6.6849
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0255s0012.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08597645348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                           +WT  E   lv++v+  Ggg W+ I +        Rt+ ++k++w+++l
  Sphfalx0255s0012.2.p 597 PWTLHEVMTLVEGVAHCGGGKWADIKKLAFssiGYRTAVDLKDKWRNLL 645
                           7**************************9888888*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.082590649IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-11591647IPR009057Homeodomain-like
SMARTSM007177.4E-7594647IPR001005SANT/Myb domain
CDDcd116607.32E-20596646No hitNo description
SuperFamilySSF466892.96E-15597667IPR009057Homeodomain-like
PfamPF002497.3E-6597645IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MLEYTEEDKS DEGPPSSSVV ERSPAANKTG TADRLVYKLV KVGDDGSVLP ATEDEVFQSL  60
VEGRSAELAP SFTGGSDSNE DYEDEEGSGG SLDSDDDDLD AKEDPSFSSE LKNLVAERKK  120
LLARFEVVDT MLSRVDAEQQ NRVSLEDQAG SVLGHKSNLS VYMSTGDAIG DYKRQRRPNP  180
RYFDFDAKGT HRARAVVNQK PSTWTSTKVQ APKSVGVPVV NSMPNPTSLE NLSIRELHEA  240
FRSTYGRDTS VKDKHWLKRQ ISTGWSKQRD AALSIGSHSQ LPSQTDPKVR PEQRLSAEQP  300
LPSSTAVTEL VTERDMVNGG QELGTNGVDL TEQLCTNEVD SKQSLCRVLP LAVISPEEGF  360
DASAPGSLNE LGAGGAQIAV FGEVVNTGKQ VGGKRQRKPN RRYIEDEGEV GPGTVIANCS  420
RPGPAGSDSG GHGSGMSSRL SWRTVITDAG PADLVGQSGT LQVSTLQNSS RANILQGQCT  480
NSGNSSLKHK AEGRATKLVK TTHSAAPASQ HDNEGTVLKV KFRLPAAPGR DKDGLYELNE  540
EARDQGSCLL PVPSRDSADL LQPLASDIGG AGPAGEQLVA APVPTANGGT RRKHHHPWTL  600
HEVMTLVEGV AHCGGGKWAD IKKLAFSSIG YRTAVDLKDK WRNLLRASRA QLYPPKQGER  660
KKQFTAAIPD TLLAQVRELA AIQCQEAPGR GAAGMTSRSG RSVHRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366866.10.0uncharacterized protein LOC112278048 isoform X1
RefseqXP_024366994.10.0uncharacterized protein LOC112278048 isoform X1
RefseqXP_024367079.10.0uncharacterized protein LOC112278048 isoform X1
RefseqXP_024367147.10.0uncharacterized protein LOC112278048 isoform X1
TrEMBLA0A2K1L2G60.0A0A2K1L2G6_PHYPA; Uncharacterized protein
STRINGPP1S43_165V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-27TRF-like 6