PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0255s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 766aa MW: 81812.1 Da PI: 6.8334 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.7 | 2.7e-08 | 656 | 704 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E lv++v+ Ggg W+ I + Rt+ ++k++w+++l Sphfalx0255s0012.1.p 656 PWTLHEVMTLVEGVAHCGGGKWADIKKLAFssiGYRTAVDLKDKWRNLL 704 7**************************9888888*************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.082 | 649 | 708 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-11 | 650 | 706 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-7 | 653 | 706 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.74E-20 | 655 | 705 | No hit | No description |
SuperFamily | SSF46689 | 3.35E-15 | 656 | 726 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.0E-6 | 656 | 704 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 766 aa Download sequence Send to blast |
MLEYTEEDKS DEGPPSSSVV ERSPAANKTG TADRLVYKLV KVGDDGSVLP ATEDEVFQSL 60 VEGRSAELAP SFTGGSDSNE DYEDEEGSGG SLDSDDDDLD AKEDPSFSSE LKNLVAERKK 120 LLARFEVVDT MLSRVDAEQQ NRVSLEDQAG SVLGHKSNLS VYMSTGDAIG DYKRQRRPNP 180 RYFDFDAKGD PAPPAMPPLM TLRSSTGEPT VTGTSPEKLH LQPSGLVTII PRNACGRGSQ 240 QSCIQIAGTH RARAVVNQKP STWTSTKVQA PKSVGVPVVN SMPNPTSLEN LSIRELHEAF 300 RSTYGRDTSV KDKHWLKRQI STGWSKQRDA ALSIGSHSQL PSQTDPKVRP EQRLSAEQPL 360 PSSTAVTELV TERDMVNGGQ ELGTNGVDLT EQLCTNEVDS KQSLCRVLPL AVISPEEGFD 420 ASAPGSLNEL GAGGAQIAVF GEVVNTGKQV GGKRQRKPNR RYIEDEGEVG PGTVIANCSR 480 PGPAGSDSGG HGSGMSSRLS WRTVITDAGP ADLVGQSGTL QVSTLQNSSR ANILQGQCTN 540 SGNSSLKHKA EGRATKLVKT THSAAPASQH DNEGTVLKVK FRLPAAPGRD KDGLYELNEE 600 ARDQGSCLLP VPSRDSADLL QPLASDIGGA GPAGEQLVAA PVPTANGGTR RKHHHPWTLH 660 EVMTLVEGVA HCGGGKWADI KKLAFSSIGY RTAVDLKDKW RNLLRASRAQ LYPPKQGERK 720 KQFTAAIPDT LLAQVRELAA IQCQEAPGRG AAGMTSRSGR SVHRK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366866.1 | 0.0 | uncharacterized protein LOC112278048 isoform X1 | ||||
Refseq | XP_024366994.1 | 0.0 | uncharacterized protein LOC112278048 isoform X1 | ||||
Refseq | XP_024367079.1 | 0.0 | uncharacterized protein LOC112278048 isoform X1 | ||||
Refseq | XP_024367147.1 | 0.0 | uncharacterized protein LOC112278048 isoform X1 | ||||
TrEMBL | A0A2K1L2G6 | 0.0 | A0A2K1L2G6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S43_165V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72650.2 | 3e-27 | TRF-like 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0255s0012.1.p |