PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0254s0001.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 450aa    MW: 47997.1 Da    PI: 8.2966
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0254s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.21.4e-382103111101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+++C++apyf a+q +++fa+vhk+FGasnv kll ++p  +r da+ ++ yeA+ar++dPvyG+v++i++lqqq++
  Sphfalx0254s0001.1.p 210 PCGACKFLRRKCVRGCIFAPYFGADQgAARFAAVHKIFGASNVAKLLLHIPMPRRCDAVLTISYEAQARLSDPVYGCVATIFALQQQVA 298
                           7***********************9989************************************************************* PP

                DUF260  89 qlkaelallkeel 101
                           +l+aela+++++l
  Sphfalx0254s0001.1.p 299 SLQAELAMVQAQL 311
                           *********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.961209311IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-37210308IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
LLHLHLSRTA SCRSLESLNR LAGPGKSALR EVAAAVGSQF QSRDLWPVQQ ASLQTGDNSR  60
GGKRPADENQ ASDPKVNDQL ETWGRESRDR PLEHAASWSS FQNRNNLEQE WRPRGGATDY  120
QLEPNRGENT STREGESATT ENRGGLDSSD RNKGGEIGST GLGALESAAR SSARAKGGAG  180
SAAAPRSSSR EATAGGSGSS YTASMSSGAP CGACKFLRRK CVRGCIFAPY FGADQGAARF  240
AAVHKIFGAS NVAKLLLHIP MPRRCDAVLT ISYEAQARLS DPVYGCVATI FALQQQVASL  300
QAELAMVQAQ LADRHAAAAH QLQQQHQQHQ QMGGLSAAAS QAAYMQQFEQ SELNMPPTSA  360
LSMSLPSGSS SAAAAAQNYL RIKEEGSRPY HGMQHEFQYG MPSNTLEPLQ HQGLVESLEK  420
PRSGGTQLSD QPDDGELQAL AHSLLRRSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-342073118111LOB family transfactor Ramosa2.1
5ly0_B7e-342073118111LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390481.11e-111uncharacterized protein LOC112289471
TrEMBLA0A2K1JQK51e-109A0A2K1JQK5_PHYPA; Uncharacterized protein (Fragment)
STRINGPP1S261_2V6.11e-113(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.17e-57LOB domain-containing protein 20