PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0253s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | Whirly | ||||||||
Protein Properties | Length: 271aa MW: 29824.4 Da PI: 10.1853 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 161.9 | 1.7e-50 | 92 | 228 | 2 | 138 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90 yk+k+al++ +++p fe +++g ++++r+G+l+le+a+++++++ydW++kq +ls+ e++ l++l + es effhdp +++s++Gkv Sphfalx0253s0017.1.p 92 FYKGKGALSLRPKKPVFEVIEAGGVTVSREGSLFLEFAPSVGPKTYDWSRKQIISLSVLELGRLLELQAGESVEFFHDPNMGKSEQGKV 180 6**************************************************************************************** PP Whirly 91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 rk+l++eP+pd +G+f+nl+v n++v +++ +vP+ kaefav+rsl+ Sphfalx0253s0017.1.p 181 RKSLRIEPIPDKTGYFFNLTVANKIVGFEDRQMVPIMKAEFAVMRSLM 228 *********************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.9E-64 | 83 | 248 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.98E-54 | 84 | 249 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 9.2E-53 | 93 | 227 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MLKMIGFQKH AAMAWGVSTR ELVGGGLRQL GSFAGGSSSS DGTSIRWRRR QHWQQIAMRP 60 SPRCVTFSTS VAGMSQPSGA LPYGKVYVNY TFYKGKGALS LRPKKPVFEV IEAGGVTVSR 120 EGSLFLEFAP SVGPKTYDWS RKQIISLSVL ELGRLLELQA GESVEFFHDP NMGKSEQGKV 180 RKSLRIEPIP DKTGYFFNLT VANKIVGFED RQMVPIMKAE FAVMRSLMNY LIPHLLGWQV 240 FVDPSQLDDS MFGGEQGMTA GAVGVSEWAK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 3e-59 | 85 | 262 | 37 | 214 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 3e-59 | 85 | 262 | 37 | 214 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 3e-59 | 85 | 262 | 37 | 214 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 3e-59 | 85 | 262 | 37 | 214 | p24: plant transcriptional regulator PBF-2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021746193.1 | 2e-62 | single-stranded DNA-binding protein WHY1, chloroplastic-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02740.2 | 6e-52 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0253s0017.1.p |