PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0253s0012.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 719aa    MW: 75814.2 Da    PI: 6.9475
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0253s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003295319123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           ++C+   C+k+F+++ ++k H +tH
  Sphfalx0253s0012.1.p 295 FRCGhdGCNKTFKNPQTMKMHHKTH 319
                           89**********************9 PP
2zf-C2H214.78.8e-05361383223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp+C+k+F   ++L+rH  + H
  Sphfalx0253s0012.1.p 361 RCPKCKKTFVGLYELRRHYGRkH 383
                           7*****************86666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.34E-6291320No hitNo description
Gene3DG3DSA:3.30.160.601.7E-7293319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0049295319IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325295324IPR007087Zinc finger, C2H2
PROSITE patternPS000280297319IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-5360410No hitNo description
SMARTSM003550.12360383IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808360388IPR007087Zinc finger, C2H2
PROSITE patternPS000280362383IPR007087Zinc finger, C2H2
SMARTSM00355180390410IPR015880Zinc finger, C2H2-like
SMARTSM00355210416437IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MAVAPPPSCF GDSLFSHWQL GSPFPTLSSS SLLPLSNDSA CPVALGSGPG AAGSSSTVAM  60
AAAAHHQSLF FNGSGGGGDT AATALGGSWN FDPFLSENYY TLGTNLQTVV ESMYPPAVDD  120
YLTLGSCELD SSLTAYGPSV AASTMSSSSA GCSTSTVMHP NLVSTLKSMV QASASDHTGT  180
SSSGLQASTC SLTCFPAPLF ETQQPDPMQA AAGTLNTHIA FSQLFDSHHG ADQRNLQHSV  240
FAASENSCIT TQRQQHSLEP MIKQEMEKSS DSSAADDSME AAVVPVDLIQ NRRPFRCGHD  300
GCNKTFKNPQ TMKMHHKTHY ADGRSGSASR SAASLGASSA QSVTAGAPSL KAGQNKKIPS  360
RCPKCKKTFV GLYELRRHYG RKHSEGEKGF GCRKCGKKFY IEVDVRDHEK LCGESIECKC  420
GLKFAFKCNL VAHKKAHPAC QDNHGAAAAA TTTSSDDSAS DQSRGNSPGT APAGLKLQPS  480
AGTASSRSVA AGSKQGSSSR RNQRQQQQQQ EVASSPHLAQ SDQQLIIPPL PDFSEDFRQS  540
PQYNLLSYVG MDAFPVTSSA TAAAAVAETS IWPSSQYMTE FMNSTSTATQ LHSFTNFGAG  600
MSCITAPMIN PDYFTSSRSN ALVSEFPQAA QQQDHSDMMQ MFSIKAAAGS NNLLEDLVCS  660
SSGYESAHHV QLIPAPQLPA TAALSSMQDR LSAAAYCTST SVCNFQQALN NRPYGSYM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-