PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0253s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C2H2 | ||||||||
Protein Properties | Length: 719aa MW: 75814.2 Da PI: 6.9475 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.0003 | 295 | 319 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ ++k H +tH Sphfalx0253s0012.1.p 295 FRCGhdGCNKTFKNPQTMKMHHKTH 319 89**********************9 PP | |||||||
2 | zf-C2H2 | 14.7 | 8.8e-05 | 361 | 383 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k+F ++L+rH + H Sphfalx0253s0012.1.p 361 RCPKCKKTFVGLYELRRHYGRkH 383 7*****************86666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.34E-6 | 291 | 320 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-7 | 293 | 319 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0049 | 295 | 319 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.325 | 295 | 324 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 297 | 319 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.13E-5 | 360 | 410 | No hit | No description |
SMART | SM00355 | 0.12 | 360 | 383 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.808 | 360 | 388 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 362 | 383 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 180 | 390 | 410 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 210 | 416 | 437 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MAVAPPPSCF GDSLFSHWQL GSPFPTLSSS SLLPLSNDSA CPVALGSGPG AAGSSSTVAM 60 AAAAHHQSLF FNGSGGGGDT AATALGGSWN FDPFLSENYY TLGTNLQTVV ESMYPPAVDD 120 YLTLGSCELD SSLTAYGPSV AASTMSSSSA GCSTSTVMHP NLVSTLKSMV QASASDHTGT 180 SSSGLQASTC SLTCFPAPLF ETQQPDPMQA AAGTLNTHIA FSQLFDSHHG ADQRNLQHSV 240 FAASENSCIT TQRQQHSLEP MIKQEMEKSS DSSAADDSME AAVVPVDLIQ NRRPFRCGHD 300 GCNKTFKNPQ TMKMHHKTHY ADGRSGSASR SAASLGASSA QSVTAGAPSL KAGQNKKIPS 360 RCPKCKKTFV GLYELRRHYG RKHSEGEKGF GCRKCGKKFY IEVDVRDHEK LCGESIECKC 420 GLKFAFKCNL VAHKKAHPAC QDNHGAAAAA TTTSSDDSAS DQSRGNSPGT APAGLKLQPS 480 AGTASSRSVA AGSKQGSSSR RNQRQQQQQQ EVASSPHLAQ SDQQLIIPPL PDFSEDFRQS 540 PQYNLLSYVG MDAFPVTSSA TAAAAVAETS IWPSSQYMTE FMNSTSTATQ LHSFTNFGAG 600 MSCITAPMIN PDYFTSSRSN ALVSEFPQAA QQQDHSDMMQ MFSIKAAAGS NNLLEDLVCS 660 SSGYESAHHV QLIPAPQLPA TAALSSMQDR LSAAAYCTST SVCNFQQALN NRPYGSYM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0253s0012.1.p |