PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0253s0011.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 532aa    MW: 58333.5 Da    PI: 5.3912
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0253s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.56.3e-12269370186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkrt 72 
                           +W++  + +L+ a  e+ ++l+r++   + W+++++++                 + +g  ++++qC+ k +nl+kryk ++e +    
  Sphfalx0253s0011.1.p 269 EWSEGATIVLLSAFAEKYRALERSNFTSKIWSDIAAYVnarrgplgalkgtssisQWEGTPKTQEQCRIKVDNLKKRYKVEREKMLTS- 356
                           5*****************************************************999**********************999988774. PP

              trihelix  73 sessstcpyfdqle 86 
                             ++s++p++  +e
  Sphfalx0253s0011.1.p 357 GIATSKWPFYYTME 370
                           667779****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-16268372No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MAEVLLTMLW GCNKKRRSWR GRRMGMMGTA RKRRDGGIVE EDHEAQSMVT EARKVAIASD  60
GGLEDREVSV GGVCHVVPLG ARGGTQEVKK GGVLYGERMV EEEEVESYGS RQEEVENMGG  120
LEEVENIAGR VVASGGQVEM VGGGGCGNVM RHHVDRDVRG GNTEHMVMRR AKIEMCAVEG  180
GHVALESLDG VKLQEGYEDA AMDDNNNNGG GGEHGGGGAF GTAMVRFGKE NNYDGEERRQ  240
SEEDEEAGTT LSPNVVKGRG RPSREAAVEW SEGATIVLLS AFAEKYRALE RSNFTSKIWS  300
DIAAYVNARR GPLGALKGTS SISQWEGTPK TQEQCRIKVD NLKKRYKVER EKMLTSGIAT  360
SKWPFYYTME ELIGSKPWHT RVGGGTGGSP RLGFANGQQL AIQSSAEEGD RIFYLEARNE  420
IDVDYKPDTI YNFTPLLGCG KHKKAFEDLE LEHINAASLR ALFEGFNVAE NIIDAMAYEE  480
VDEDTLLNSK DVGSLLEKIQ VKHQLPIKLG PAERIKQAIE EAKEKKLRAV Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11433KRRSWRGRRMGMMGTARKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389101.11e-103uncharacterized protein LOC112288783
TrEMBLA0A2K1JTD11e-101A0A2K1JTD1_PHYPA; Uncharacterized protein
STRINGPP1S39_431V6.11e-102(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.13e-19Trihelix family protein