PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0253s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 714aa MW: 78391.3 Da PI: 5.074 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.7e-11 | 529 | 574 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++ N+++++L +l+P kK + +++L+++++YI++L+ Sphfalx0253s0009.1.p 529 HKLAERCRRSKFNDKLQTLCTLVPII-----KKKDRVSVLTHTIDYIHQLK 574 99***********************7.....699***************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.63 | 524 | 573 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.98E-14 | 527 | 587 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-13 | 529 | 583 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-8 | 529 | 573 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.48E-12 | 529 | 577 | No hit | No description |
SMART | SM00353 | 2.4E-11 | 530 | 579 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 714 aa Download sequence Send to blast |
MTGAVSLLNL RMSEDEISQK RLKDLVQSLG WTYGVIWKLS SSDRVLEWVH GWFNPASTES 60 GQTLMPQFYS IFKTCSFKDP CAPGYSTLAL QQHSPVWWTS NMAEVPTDKC KARFLQEAHI 120 QTVVCIPWPG ADGMYCTELA TTALVPQTDA LMNSLQEYVS MSVTPHVFGA VEPPLPSSLG 180 SLDSQEEEYL NSDQFSSLPV ASPLDSGTTG AQTLAPGLSE AGFVPPVNLN RYAPSNFNES 240 LGSSGMILKE EEPYYPWTAT GNLSFFDYEF DTDIDVEKTM FDSLDSKEAT KSLSSIGVMS 300 PCKWDPDTLE PKEVVLAAAV PDFPASSLEH SSHTNSVSLP AQNAEDLLVL LAGTKPHDQS 360 ASKSMATVTP QMDGHISTIS HLLESVSSYG TPQAEVKTAE QETPSIDPFY LQQSTDMSFT 420 QNLPGWPHNG TNPLMDMHSK NLVLPVSHFQ HSHQSFFQRR GCSKLEVPAG HARPARQSLF 480 MLWTEKIVPM IKEEAQKEKL AEQELARSCP SSGETVRPNP ANDEAAHVHK LAERCRRSKF 540 NDKLQTLCTL VPIIKKKDRV SVLTHTIDYI HQLKTQVTQL EKAAGPLLKQ EKGIDYSQPP 600 ASTMSEEFST LSSSSRSPIK VAVSPNEDGL VINVEASNHT ETLVRILSVS RDLGLEIRSF 660 NSKSINDQVQ VAVNVVVQGV HEMSSRHVQE ALWGVLVASD SSLSPITSDH LLT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 1e-09 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0253s0009.1.p |