PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0252s0016.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 254aa    MW: 26049.1 Da    PI: 8.2361
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0252s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260145.71.3e-4581071100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++lp+++reda++sl+yeA+ar++dPvyG+vg i+ lq+q+ q
  Sphfalx0252s0016.1.p   8 PCAACKFLRRKCTAECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPQHQREDAVNSLAYEADARVKDPVYGCVGAISLLQRQVVQ 96 
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkee 100
                           l++ela +++ 
  Sphfalx0252s0016.1.p  97 LQNELAIAHSD 107
                           ******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.2867108IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-448105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MASSSSSPCA ACKFLRRKCT AECVFAPYFP PDQPHKFANV HKIFGASNIT KLLNELPQHQ  60
REDAVNSLAY EADARVKDPV YGCVGAISLL QRQVVQLQNE LAIAHSDLAG YAGARMVIGG  120
PASGSQAHGG AAAAGGPSSS SASLGIGMGL PGTAQSGGRE QHQILTREQL SGLARDQPPQ  180
QLTREQIMEL ARVGGGSYEA GLAALGLSGA LTADPLGSGQ YSSSRTTGGE SHGSGRHGDR  240
TAGLGHMQQS RGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-59711210115LOB family transfactor Ramosa2.1
5ly0_B4e-59711210115LOB family transfactor Ramosa2.1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356367.12e-95protein LATERAL ORGAN BOUNDARIES-like isoform X1
RefseqXP_024356368.11e-95protein LATERAL ORGAN BOUNDARIES-like isoform X2
RefseqXP_024356369.11e-95protein LATERAL ORGAN BOUNDARIES-like isoform X2
RefseqXP_024356370.11e-95protein LATERAL ORGAN BOUNDARIES-like isoform X2
RefseqXP_024356371.11e-95protein LATERAL ORGAN BOUNDARIES-like isoform X2
TrEMBLA0A2R6WTX82e-99A0A2R6WTX8_MARPO; Uncharacterized protein
STRINGPP1S170_93V6.18e-95(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-59LOB domain-containing protein 25