PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0246s0015.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 297aa    MW: 31781 Da    PI: 8.898
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0246s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.12.9e-386105199
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC ++Cv+apyf aeq ++kfa+vhk+FGasnv kll ++p  +r+da+ ++ yeA+ar+ dPvyG+v++i++lqqq++
  Sphfalx0246s0015.1.p   6 PCGACKFLRRKCLRGCVFAPYFGAEQgAAKFAAVHKIFGASNVAKLLLHIPLPRRSDAVLTISYEAQARLADPVYGCVATIFALQQQVA 94 
                           7***********************9989************************************************************* PP

                DUF260  89 qlkaelallke 99 
                           +l+aela++++
  Sphfalx0246s0015.1.p  95 SLQAELAMVQS 105
                           *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3195107IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-376104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSSGAPCGAC KFLRRKCLRG CVFAPYFGAE QGAAKFAAVH KIFGASNVAK LLLHIPLPRR  60
SDAVLTISYE AQARLADPVY GCVATIFALQ QQVASLQAEL AMVQSANRQA AAAAALVHQH  120
HHQHLQQQQL LQQTAGAGPQ IQLSPSAAGM MQLAGQLQHE AKAGAAHELI SPAINLCNIS  180
IMSGSSAAHG NTYASPRVKE ENNSAMQQAR QYVDNCNMGM SINPASSSHR LPDHSNLHKF  240
RRIRHDDEPI NLMNPTVLVH ELHHRQQTSS HDDQAGAGST GGDHLSQTLA SILPRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3731008104LOB family transfactor Ramosa2.1
5ly0_B4e-3731008104LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1JQK54e-66A0A2K1JQK5_PHYPA; Uncharacterized protein (Fragment)
STRINGPP1S261_2V6.12e-66(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-57LOB domain-containing protein 20