PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0243s0003.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 484aa    MW: 53141 Da    PI: 4.5704
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0243s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.31.1e-14126179154
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                           s+y GVr+++   +WvAeIr+  ++   +  k+++lg++ ++e+Aa a +aark l+
  Sphfalx0243s0003.1.p 126 SKYYGVRFRPDLSKWVAEIRVaEWK---SvdKKVWLGTYISEEGAAHAVDAARKILR 179
                           7999*****************6433...345**********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-8126176IPR001471AP2/ERF domain
CDDcd000182.70E-11126174No hitNo description
SuperFamilySSF541715.75E-9126182IPR016177DNA-binding domain
SMARTSM003802.3E-5127195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-13127189IPR001471AP2/ERF domain
PROSITE profilePS5103215.053127189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MPESFTQPVD LSHPDLRGFN HKAAASSNTS FVRCRNCPGL QTASFQLQIC CKFVHQNTSQ  60
FEHKESNLGF AAADPFLEAT GDSTSVPSDD VQEDGANISC SRAQQDEVQN TMQATSRRPR  120
NKECSSKYYG VRFRPDLSKW VAEIRVAEWK SVDKKVWLGT YISEEGAAHA VDAARKILRC  180
NKKQKPNFSC KQLEAYAESL PPELSLKNIS DNTIFKAITE FVKGKARQYA SEFVSTPIPK  240
EIRTSTPVNN NRQPGAGGDV SPSDAAAVCQ LGSITTVDAD SFELVSYLDH GVKAIEMPRD  300
FSSELSHQQL SPFHATAVIA ASDNFFDEVY GEEFVDGNAH ITTPCSSMMF LPGVSLDWSQ  360
QQPVSASTGE AVVHQDSIFM SLEEGFMMLS QPEPTHWTQD QIFGLDFNTE HMPANSDMWV  420
ENYLGSCAEE PVYTDAPMEE VDPGRASNGS WDTKLVPSFT MSSQGDGINS CMDTLLEGVL  480
SGH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.12e-08ERF family protein