PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0240s0006.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 377aa MW: 41040.1 Da PI: 6.9527

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0240s0006.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120	8.5e-38	56	112	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++cprC+s ntkfCyynnysl+qPr++Ck+CrryWt+GG+lrnvPvGgg+rk+kk+ Sphfalx0240s0006.2.p 56 MQACPRCQSLNTKFCYYNNYSLTQPRHYCKNCRRYWTAGGTLRNVPVGGGCRKKKKH 112 578***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	50	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.574	57	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-32	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MMHAIERSSL CNEEEEQQQQ QQQQPEKKIS QLFAQRAALR LQDQRRTLKP ADLQVMQACP 60 RCQSLNTKFC YYNNYSLTQP RHYCKNCRRY WTAGGTLRNV PVGGGCRKKK KHAGKQLHEA 120 GQSSGTENSE THELSAAAAA AAATTTAAEQ QQQHALLVGF SASSSSSTTG FTRSSLQGPT 180 SNILARLGQY SSQPFESGKI MSLGLLNSVM RSRAEEEEAA ARLSSHPARA ATSQQVVLVH 240 DAGGDNLGGF FDNPVVYSSR EGGGALGLTE EGHHDTYNHT EGHGEEVEEA AASYGRGEII 300 WRNLQQPKQE VLWGQEESIE GGGSLDLNRQ QEANAKFSTP SSSPAHHGLG PHEEAAQTVA 360 WQQSTGEKQT WIKPHS*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MMHAIERSSL CNEEEEQQQQ QQQQPEKKIS QLFAQRAALR LQDQRRTLKP ADLQVMQACP  60
RCQSLNTKFC YYNNYSLTQP RHYCKNCRRY WTAGGTLRNV PVGGGCRKKK KHAGKQLHEA  120
GQSSGTENSE THELSAAAAA AAATTTAAEQ QQQHALLVGF SASSSSSTTG FTRSSLQGPT  180
SNILARLGQY SSQPFESGKI MSLGLLNSVM RSRAEEEEAA ARLSSHPARA ATSQQVVLVH  240
DAGGDNLGGF FDNPVVYSSR EGGGALGLTE EGHHDTYNHT EGHGEEVEEA AASYGRGEII  300
WRNLQQPKQE VLWGQEESIE GGGSLDLNRQ QEANAKFSTP SSSPAHHGLG PHEEAAQTVA  360
WQQSTGEKQT WIKPHS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-31	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Sphfalx0240s0006.2.p