PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0240s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 387aa MW: 42224.4 Da PI: 7.4632 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120 | 8.8e-38 | 56 | 112 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++cprC+s ntkfCyynnysl+qPr++Ck+CrryWt+GG+lrnvPvGgg+rk+kk+ Sphfalx0240s0006.1.p 56 MQACPRCQSLNTKFCYYNNYSLTQPRHYCKNCRRYWTAGGTLRNVPVGGGCRKKKKH 112 578***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-23 | 50 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.574 | 57 | 111 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.1E-32 | 57 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 59 | 95 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 387 aa Download sequence Send to blast |
MMHAIERSSL CNEEEEQQQQ QQQQPEKKIS QLFAQRAALR LQDQRRTLKP ADLQVMQACP 60 RCQSLNTKFC YYNNYSLTQP RHYCKNCRRY WTAGGTLRNV PVGGGCRKKK KHAGKQLHEA 120 GQSSGTENSE THELSAAAAA AAATTTAAEQ QQQHALLVGF SASSSSSTTG FTRSSLQGPT 180 SNILARLGQY SSQPFESGKI MSLGLLNSVM RSRAEEEEAA ARLSSHPARA ATSQQVVLVH 240 DAGGDNLGGF FDNPVVYSSR EGGGALGLTE EGHHDTYNHT EGHGEEVEEA AASYGRGEII 300 WRNLQQPKQE VLWGQEESIE GGGSLDLNRQ QEANAKFSTP SSSPAHHGLG PHEEAAQTVA 360 WQQSTGVSQV RSKLGSNRTH RNQWHF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60850.1 | 4e-31 | OBF binding protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0240s0006.1.p |