PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0235s0010.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 820aa    MW: 89487.8 Da    PI: 6.3548
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0235s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.81.3e-21119174156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++ +++t+ q++e+e lF+++++p+ ++r++L+k+lgL+ rqVk+WFqNrR+++k
  Sphfalx0235s0010.1.p 119 KKRYHRHTPRQIQEMEMLFKECPHPDDKQRQHLSKELGLEPRQVKFWFQNRRTQMK 174
                           688999***********************************************998 PP
2START208.62.3e-653225471206
                           HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
                 START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                           ela +a++el+++a+a+ep+W++        e++n+de++ +f+++ +      ++ea r++g+v     +lve+l+d++ qW e+++ 
  Sphfalx0235s0010.1.p 322 ELAVTAMEELLRMAQANEPLWMQGGadgsgkEQLNYDEYMLQFPRGIGlrppgLKTEATRETGLVMNSGGRLVETLMDSS-QWLEMFPc 409
                           57899******************99999*****************999********************************.******** PP

                           ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
                 START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                              +a t++v+s+g      galqlm+aelq+lsplvp R+ +f+Ry++q+ +g+w++vdvSvds +++p  +s++R++++pSg+li++
  Sphfalx0235s0010.1.p 410 mvsRALTVDVLSTGvngnrnGALQLMYAELQVLSPLVPtREIYFLRYCKQHAEGVWAVVDVSVDSLRDNP-PPSLMRCRRRPSGMLIQD 497
                           **********************************************************************.7***************** PP

                           ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                 START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                           ++ng++kvt veh+++++r +h ++r lv++g+a+ga++w a lqrqce+
  Sphfalx0235s0010.1.p 498 TQNGYCKVTAVEHMEYDDRAVHRIYRDLVNTGMAFGAQRWIAILQRQCES 547
                           ************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.72E-20101175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-22104170IPR009057Homeodomain-like
PROSITE profilePS5007116.925116176IPR001356Homeobox domain
SMARTSM003893.2E-20117180IPR001356Homeobox domain
CDDcd000861.03E-19118174No hitNo description
PfamPF000464.3E-19119174IPR001356Homeobox domain
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PROSITE profilePS5084845.872313550IPR002913START domain
SuperFamilySSF559612.75E-36314549No hitNo description
CDDcd088753.80E-127317546No hitNo description
SMARTSM002341.2E-57322547IPR002913START domain
PfamPF018521.0E-55323547IPR002913START domain
Gene3DG3DSA:3.30.530.204.9E-5433546IPR023393START-like domain
SuperFamilySSF559611.92E-23575811No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MRLGGVTVQV PGNGTLGRGG FGELGGMPAG LMAPPRPVLP PLGGPRPVKQ HHSSPSLSLA  60
PPMGLMEGQR EISQTAESEQ HQQQQQKNKE EEYESRSGSD NMEGGSGDDQ DPDGHPPRKK  120
RYHRHTPRQI QEMEMLFKEC PHPDDKQRQH LSKELGLEPR QVKFWFQNRR TQMKAHTERA  180
ENSLLRQENE KLRSENILMR EALKNPTCQH CGGPASLGEM SLDEHRIENV RLKEELDRVS  240
ALAAKYLGRP IMPTPHEPPQ LLNAPTLALP SSSLDLQVGG GSSFDLLPTT AGSMDIVQGP  300
SVADVATRPG GLTEAEKPMV VELAVTAMEE LLRMAQANEP LWMQGGADGS GKEQLNYDEY  360
MLQFPRGIGL RPPGLKTEAT RETGLVMNSG GRLVETLMDS SQWLEMFPCM VSRALTVDVL  420
STGVNGNRNG ALQLMYAELQ VLSPLVPTRE IYFLRYCKQH AEGVWAVVDV SVDSLRDNPP  480
PSLMRCRRRP SGMLIQDTQN GYCKVTAVEH MEYDDRAVHR IYRDLVNTGM AFGAQRWIAI  540
LQRQCESLAS LQATNLATRD LGGIASAEGR LSMLKLAQRM TNNFCAGVSA STVHTWTTLS  600
GSGDNDVRVM TRKSVDNPGE PHGIVLSAAT SMWLPVAPQR VFEFLRDERL RSEWDILSNG  660
GLVAEMAHIA KGQDPGNSVS LLRVNPMNAS QSNMLILQES CTDVSGALVI YAPVDIPAMN  720
LVLRGGDPAY VALLPSGFAI LPDGPAENRR AAATMMSHDN NSDNNGPRTT GGSLLTVAFQ  780
ILVSTVPSAR LSLESVATVN SLISCTVQRI KAALHCEDA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394838.10.0homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_024394839.10.0homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLQ147S40.0Q147S4_PHYPA; Class IV HD-Zip protein HDZ43
STRINGPP1S209_10V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]