PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0230s0010.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 1118aa    MW: 121444 Da    PI: 7.5117
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0230s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05155177123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C++C++ F r  nL+ H r+H
  Sphfalx0230s0010.1.p 155 YVCEICNQGFQRDQNLQMHRRRH 177
                           9*********************9 PP
2zf-C2H2140.00015232254123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C +C+k +  +s++k H++t+
  Sphfalx0230s0010.1.p 232 WVCDKCSKGYAVQSDYKAHLKTC 254
                           58*******************98 PP
3zf-C2H2110.0013260280323
                           ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                           C dCg++Fsr +++  H+ ++
  Sphfalx0230s0010.1.p 260 CCDCGRVFSRVESFIEHQDMC 280
                           *****************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.2E-5154177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.97155177IPR007087Zinc finger, C2H2
SMARTSM003550.0052155177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SMARTSM00355100196226IPR015880Zinc finger, C2H2-like
SMARTSM0035597232252IPR015880Zinc finger, C2H2-like
SMARTSM00355130258278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1118 aa     Download sequence    Send to blast
MQQRQQQHSI LDWSRIECSK GLKEVVPAAY LHQFDQLYST SMTANQLHAH AAHILRFSAA  60
AGCENNNIHH HPSSSVVIES GRSLQQQDTV LAAAVVARST TTGGGGGDGH HGWSTTTPAS  120
SGGGNKRKRR PAGTPDPDAE VVALSPETLM ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP  180
WKLLKKASLI THKRVYVCPE LTCLHHDPSH ALGDLVGIKK HFRRKHCNEK QWVCDKCSKG  240
YAVQSDYKAH LKTCGTRGHC CDCGRVFSRV ESFIEHQDMC NAAEEQKLAE SMQRGDNEKQ  300
HLRKSSTTLQ HMSSPITTAG RRNILSSCNE ESPSQSSDTT AAPFAHSGIS DNTAASADSS  360
RLNEQVISTK TFDSNSHEVE AVSAAVVAGP TSWVHHERRR CIELQQLLPS ATQALHERLE  420
SYSESALQAS STPHDTRLLE AVSSTSRRSH AETTRGLISS ELCPDMSLSA DCKSLTPDCC  480
RSMDDVVNTP PSLQLTIGPY SKESAEVNIS NDRGSNYVNT LQPAGSMDRK PHLDAGADHR  540
LNVVGTMSNY QQLQQDRPVD AGEAAQVVRS GCNKGIGEDL ALSFPAATAA SVLQPDAAAR  600
NEALVVFEEA GAGNVTKAVT MSVKEFRTSQ RSRLPVIRDD SSTTTAARTQ EPAINAFNQQ  660
ESSAAPPRNS SYPPVIIKTS RSANSSLQYT PSYADRGSGL KSQVVDLERT SLESETAAVR  720
EDLIWAAQRT SNIVQLQPPP QVAQRSTPEP AADNHPGGGP TQYEKHARGQ QRGIFHSEFL  780
IVPRAVERTG SAASRQNELG ATAACADEAN KARLEQARTE MNSAWLDLAA ARRTKEQARL  840
ESTEAQNEIA RAEVLKREAR EQIQQASAEK AYADHARDVA KRQMDMAEAE LADAKRMRER  900
AQAEIDTSRL ILKEQSDQCS SVDAAIIRAS PRDHQSLRSS CCSYVCQVCC KSDQPVGRDL  960
SLGLQQTTTH KSIPVQPGFV SSHWPGTKTD HKILLLQNAS NEIRNRAAAA AGLVNYHTER  1020
ENTFEAVAGA RYGDNDHNAS TRLLSHMIGE SSAACRRWSA ASLAGVTAAG RDGRCSPGLL  1080
AANSIPATFA TNMSCTIEAT GSVNPRTSTD HHSQSGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-18229286461Zinc finger protein JACKDAW
5b3h_F5e-18229286461Zinc finger protein JACKDAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376932.11e-112uncharacterized protein LOC112282945 isoform X2
STRINGPP1S218_34V6.11e-111(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.17e-98C2H2-like zinc finger protein