PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0228s0009.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 377aa MW: 40994.1 Da PI: 6.7887

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0228s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.5	5.3e-37	58	114	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k ++cprC+s+ntkfCy+nnys++qPryfC++C+ryWt GG+lrnvPvGgg+rk+ + Sphfalx0228s0009.1.p 58 KVIPCPRCESMNTKFCYFNNYSVKQPRYFCRQCQRYWTMGGSLRNVPVGGGSRKKSR 114 6789**************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-20	58	105	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-32	58	114	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.969	60	114	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MQSLMMNPDS TSMGESLKGE EQARGTVASP ASPAAGEGRS GSSSPGSGSS VRDKVAAKVI 60 PCPRCESMNT KFCYFNNYSV KQPRYFCRQC QRYWTMGGSL RNVPVGGGSR KKSRIRRSDP 120 YLRSAATQGV VTAPLSSEAL SSNSSPLLQN LGFQQLLMQD VNTTTPYHHM AGFELQQEHY 180 LEHHDPSLFY PVMNKSTNPQ EVSSMHPMYV SSRSSNLGIL NANPLLTTAN GSYYSTPNAE 240 FAQGDTTDQV TQWGSSVPEH LQTQSIWNES KQQSRSPNGH HHTAHDEECN NISNSPHAKL 300 HTKAEGGYEP CNMLLHLGMN NKSGPEGSVA RNGASPPHGS STIEEEGSTL TNGYSTNGYE 360 DGDAVSSMWP DLEFFR*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MQSLMMNPDS TSMGESLKGE EQARGTVASP ASPAAGEGRS GSSSPGSGSS VRDKVAAKVI  60
PCPRCESMNT KFCYFNNYSV KQPRYFCRQC QRYWTMGGSL RNVPVGGGSR KKSRIRRSDP  120
YLRSAATQGV VTAPLSSEAL SSNSSPLLQN LGFQQLLMQD VNTTTPYHHM AGFELQQEHY  180
LEHHDPSLFY PVMNKSTNPQ EVSSMHPMYV SSRSSNLGIL NANPLLTTAN GSYYSTPNAE  240
FAQGDTTDQV TQWGSSVPEH LQTQSIWNES KQQSRSPNGH HHTAHDEECN NISNSPHAKL  300
HTKAEGGYEP CNMLLHLGMN NKSGPEGSVA RNGASPPHGS STIEEEGSTL TNGYSTNGYE  360
DGDAVSSMWP DLEFFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	2e-25	Dof family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0228s0009.1.p