PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0228s0001.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 509aa MW: 58616.6 Da PI: 7.0447

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0228s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	191	210	3	22
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C+ Cg sF + + +H+r+ Sphfalx0228s0001.1.p 191 CSTCGPSFEDMAKYSSHLRK 210 ******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02992	5.8E-57	29	233	IPR004242	Transposon, En/Spm-like
PROSITE profile	PS50157	8.663	189	221	IPR007087	Zinc finger, C2H2
Pfam	PF13960	2.0E-33	387	490	IPR025452	Domain of unknown function DUF4218

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
KVPRKSVRWF PIIPRLLHMY RCTDWAELMV WHKEHRSEPG VMRLSVDSPA HKHVESTWPE 60 FERDPRHVKL GLASDGVSPH SLGRKGRPTS VWPVVVMNYN LPPWLSMKKG FLLLSLIIPG 120 PSKVKNLDTY LALVVDELKT LWDGVWAYDG RKTTGGIPRV FKLRAICMWT MHDYPGFGFG 180 SGLQTQGYKA CSTCGPSFED MAKYSSHLRK IVYLGHTKFL PLGHDMRSDP LLFSSFDMPY 240 GDERDIPEAT TFAYWRDVAN RVIDPNDSMV FEGSGLTRWG ILNSLPYWGE LKIRHLLDPM 300 HIEGNVGKAI IKQLYGEKDS NFNREACEDF ERHPDVWITI DPNTGYGANL QKAFGRDDDH 360 KWPRYFKTHD YHRLLQHILP VAIMGLVSAE ELFVEEIPRM RVIVTEVVCK LEKAFPPSLF 420 DCQVHLLVHL VDEIAIAGPV HCQWMYWLER YMAVLKGYVR NHARVEGSMA AGHLAAESMF 480 YCTNILAIID PSCPHVWMEE REEEEDRLT

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

KVPRKSVRWF PIIPRLLHMY RCTDWAELMV WHKEHRSEPG VMRLSVDSPA HKHVESTWPE  60
FERDPRHVKL GLASDGVSPH SLGRKGRPTS VWPVVVMNYN LPPWLSMKKG FLLLSLIIPG  120
PSKVKNLDTY LALVVDELKT LWDGVWAYDG RKTTGGIPRV FKLRAICMWT MHDYPGFGFG  180
SGLQTQGYKA CSTCGPSFED MAKYSSHLRK IVYLGHTKFL PLGHDMRSDP LLFSSFDMPY  240
GDERDIPEAT TFAYWRDVAN RVIDPNDSMV FEGSGLTRWG ILNSLPYWGE LKIRHLLDPM  300
HIEGNVGKAI IKQLYGEKDS NFNREACEDF ERHPDVWITI DPNTGYGANL QKAFGRDDDH  360
KWPRYFKTHD YHRLLQHILP VAIMGLVSAE ELFVEEIPRM RVIVTEVVCK LEKAFPPSLF  420
DCQVHLLVHL VDEIAIAGPV HCQWMYWLER YMAVLKGYVR NHARVEGSMA AGHLAAESMF  480
YCTNILAIID PSCPHVWMEE REEEEDRLT

Link Out ? help Back to Top
Phytozome	Sphfalx0228s0001.1.p