PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0227s0016.3.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 890aa    MW: 96873 Da    PI: 8.5611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0227s0016.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001293115123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C +C+k +  +s++k H++t+
  Sphfalx0227s0016.3.p  93 WVCDKCSKGYAVQSDYKAHLKTC 115
                           58*******************98 PP
2zf-C2H2130.0003121141323
                           ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                           C dCgk+Fsr +++  H+ t+
  Sphfalx0227s0016.3.p 121 CCDCGKVFSRVESFIEHQDTC 141
                           ******************987 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MGVVVVDTAM RVVPAMSRRL PLQRTRAATS ASAGLRGHLV PWKLLKKARL ATHKRVYVCP  60
ELTCLHHDPA HALGDLVGIK KHFRRKHCTE KQWVCDKCSK GYAVQSDYKA HLKTCGTRGH  120
CCDCGKVFSR VESFIEHQDT CAAAIQKGSM QSGNDSKSTL QRSTTTTSRR NVSSTESPSQ  180
SSADTSAPAL FTLSGISDNT APSTDHSSRL NEQVSTRLDS STSHAATNVI PPWLPERRNE  240
LQQLLPSTTT QAQRLESYSS EAALASTAQG TMRLQGVSGS RSQITRCSSK NSGIICPEVS  300
ISECKSLQAP RCLSIDELNT PSLQLTIGPG CSTKSTEVIS SEHRVQYVTP EGTIDTKPHR  360
NTVDKLHVQP VAISNFKQLR AGSAVVEVAV TTTGSNTATS VDLPLSFPMS TSVQVAVNND  420
MTGDGKIRKA SAKATMINDF RTTERFGLAR RCEETSRAQG PSNNIAFSQQ ELAARVRSSD  480
CPGIRIASAS PSYHTPYGSG GLTSQGDLRE RNESETVREN FISDQRRSIV QQSALQAAQG  540
STQEPHNNAA GDPVHKHSRD NLPQDVSPSE FLIVARTLEE PSAQKELTAT AFAEASKTRE  600
QARTEMNTAW SDLAAARRTK EQARLESTEA QNEIARAELL KREAREQLQQ ASVEKALADH  660
ARDMAKRQMD IAEAELADAK RIREHAQAEI EKSRLLKDQQ SRESLHSPLH DAAMRVSSRD  720
HNLQMSSNYI CEVCKSVPVG RDLALGLHQS TNRTPMMMPS RVGSWPESTA DHKIRPSQIN  780
APNEVNTRTG LVNYLTTREN TSEPSPSYSS YNEPNPTRLF SHMIGEPSTC RSWSVGSGAS  840
DAGEGRSSCE FLEASVPTIA TFATSMTVQA PSTSKNPRTS TDHSQSQGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-1890152466Zinc finger protein JACKDAW
5b3h_F3e-1890152466Zinc finger protein JACKDAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.22e-59C2H2-like zinc finger protein