PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0227s0016.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C2H2 | ||||||||
Protein Properties | Length: 625aa MW: 67133.6 Da PI: 8.4577 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.7e-05 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ F r nL+ H r+H Sphfalx0227s0016.2.p 99 YICEICNQGFQRDQNLQMHRRRH 121 89********************9 PP | |||||||
2 | zf-C2H2 | 14.9 | 7.8e-05 | 176 | 198 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Sphfalx0227s0016.2.p 176 WVCDKCSKGYAVQSDYKAHLKTC 198 58*******************98 PP | |||||||
3 | zf-C2H2 | 13.6 | 0.0002 | 204 | 224 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C dCgk+Fsr +++ H+ t+ Sphfalx0227s0016.2.p 204 CCDCGKVFSRVESFIEHQDTC 224 ******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.84E-5 | 96 | 122 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 98 | 121 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0065 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.866 | 99 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 140 | 170 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 97 | 176 | 196 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 100 | 202 | 222 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MTAQQLDAHA AQILHLSVCD PNSTAVIDLQ QQHTPATAGA NGGGGSGYSN AGGASHESQA 60 ATPENSGGNK RKRRPAGTPD PDAEVVALSP KTLMESDRYI CEICNQGFQR DQNLQMHRRR 120 HKVPWKLLKK ARLATHKRVY VCPELTCLHH DPAHALGDLV GIKKHFRRKH CTEKQWVCDK 180 CSKGYAVQSD YKAHLKTCGT RGHCCDCGKV FSRVESFIEH QDTCAAAIQK GSMQSGNDSK 240 STLQRSTTTT SRRNVSSTES PSQSSADTSA PALFTLSGIS DNTAPSTDHS SRLNEQVSTR 300 LDSSTSHAAT NVIPPWLPER RNELQQLLPS TTTQAQRLES YSSEAALAST AQGTMRLQGV 360 SGSRSQITRC SSKNSGIICP EVSISECKSL QAPRCLSIDE LNTPSLQLTI GPGCSTKSTE 420 VISSEHRVQY VTPEGTIDTK PHRNTVDKLH VQPVAISNFK QLRAGSAVVE VAVTTTGSNT 480 ATSVDLPLSF PMSTSVQVAV NNDMTGDGKI RKASAKATMI NDFRTTERFG LARRCEETSR 540 AQGPSNNIAF SQQELAARVR SSDCPGIRIA SASPSYHTPY GSGGLTSQGD LRERNESGED 600 RNEHGVVRPS SSEAHQGAGP PGEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-19 | 173 | 235 | 4 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 4e-19 | 173 | 235 | 4 | 66 | Zinc finger protein JACKDAW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024376932.1 | 1e-136 | uncharacterized protein LOC112282945 isoform X2 | ||||
TrEMBL | A0A2K1KKJ4 | 1e-116 | A0A2K1KKJ4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S218_34V6.1 | 1e-135 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-101 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0227s0016.2.p |