PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0227s0016.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 973aa    MW: 105742 Da    PI: 8.1373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0227s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-0599121123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y C++C++ F r  nL+ H r+H
  Sphfalx0227s0016.1.p  99 YICEICNQGFQRDQNLQMHRRRH 121
                           89********************9 PP
2zf-C2H214.20.00013176198123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C +C+k +  +s++k H++t+
  Sphfalx0227s0016.1.p 176 WVCDKCSKGYAVQSDYKAHLKTC 198
                           58*******************98 PP
3zf-C2H212.90.00033204224323
                           ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                           C dCgk+Fsr +++  H+ t+
  Sphfalx0227s0016.1.p 204 CCDCGKVFSRVESFIEHQDTC 224
                           ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.2E-598121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.006599121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.86699121IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SMARTSM00355110140170IPR015880Zinc finger, C2H2-like
SMARTSM0035597176196IPR015880Zinc finger, C2H2-like
SMARTSM00355100202222IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
MTAQQLDAHA AQILHLSVCD PNSTAVIDLQ QQHTPATAGA NGGGGSGYSN AGGASHESQA  60
ATPENSGGNK RKRRPAGTPD PDAEVVALSP KTLMESDRYI CEICNQGFQR DQNLQMHRRR  120
HKVPWKLLKK ARLATHKRVY VCPELTCLHH DPAHALGDLV GIKKHFRRKH CTEKQWVCDK  180
CSKGYAVQSD YKAHLKTCGT RGHCCDCGKV FSRVESFIEH QDTCAAAIQK GSMQSGNDSK  240
STLQRSTTTT SRRNVSSTES PSQSSADTSA PALFTLSGIS DNTAPSTDHS SRLNEQVSTR  300
LDSSTSHAAT NVIPPWLPER RNELQQLLPS TTTQAQRLES YSSEAALAST AQGTMRLQGV  360
SGSRSQITRC SSKNSGIICP EVSISECKSL QAPRCLSIDE LNTPSLQLTI GPGCSTKSTE  420
VISSEHRVQY VTPEGTIDTK PHRNTVDKLH VQPVAISNFK QLRAGSAVVE VAVTTTGSNT  480
ATSVDLPLSF PMSTSVQVAV NNDMTGDGKI RKASAKATMI NDFRTTERFG LARRCEETSR  540
AQGPSNNIAF SQQELAARVR SSDCPGIRIA SASPSYHTPY GSGGLTSQGD LRERNESETV  600
RENFISDQRR SIVQQSALQA AQGSTQEPHN NAAGDPVHKH SRDNLPQDVS PSEFLIVART  660
LEEPSAQKEL TATAFAEASK TREQARTEMN TAWSDLAAAR RTKEQARLES TEAQNEIARA  720
ELLKREAREQ LQQASVEKAL ADHARDMAKR QMDIAEAELA DAKRIREHAQ AEIEKSRLLK  780
DQQSRESLHS PLHDAAMRVS SRDHNLQMSS NYICEVCKSV PVGRDLALGL HQSTNRTPMM  840
MPSRVGSWPE STADHKIRPS QINAPNEVNT RTGLVNYLTT RENTSEPSPS YSSYNEPNPT  900
RLFSHMIGEP STCRSWSVGS GASDAGEGRS SCEFLEASVP TIATFATSMT VQAPSTSKNP  960
RTSTDHSQSQ GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-18173235466Zinc finger protein JACKDAW
5b3h_F4e-18173235466Zinc finger protein JACKDAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.14e-99C2H2-like zinc finger protein