PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0224s0023.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 839aa    MW: 91146 Da    PI: 6.3809
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0224s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-18967357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le++++++++ps  +r++L k +    +++ +q+kvWFqNrR +ek+
  Sphfalx0224s0023.1.p  9 KYVRYTNEQVEALERVYHECPKPSSIRRQQLIKDCpilaNIEPKQIKVWFQNRRCREKQ 67
                          5678*****************************************************97 PP
2START162.33.7e-511673722202
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+ +e+v+ka+ ++  W +++ +++g++ + +++ s++++g a+ra+g+v  ++   v+e+l+d++ W  +++  ++l +  +g  
  Sphfalx0224s0023.1.p 167 IAEETVTEFVAKATGTAIDWIQLPGMKPGPDAIGIVSISHGCPGVAARACGLVGLEPN-KVAEILKDRPSWLPDCRCLDILGAFPTGng 254
                           7899******************************************************.8888888888******************** PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l++++++a+++l+p Rdf ++Ry+  l++g++vi+++S++ +q  p+    +s+vRae+lpSg+li+p+++g++ +++v+hvdl+
  Sphfalx0224s0023.1.p 255 GTVELIYTQMYAPTTLAPpRDFCTLRYTTLLEDGSLVICERSLTGTQGGPTmprVQSFVRAEMLPSGYLIRPCDGGGCIIHIVDHVDLE 343
                           **************************************************999999********************************* PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqr 202
                            ++++++lr+l++s+++ ++kt+  ++++
  Sphfalx0224s0023.1.p 344 PWSVPEVLRPLYESSAVLAQKTTIVAFRH 372
                           *********************98766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.418468IPR001356Homeobox domain
SMARTSM003895.4E-15672IPR001356Homeobox domain
SuperFamilySSF466891.15E-16771IPR009057Homeodomain-like
CDDcd000863.63E-16969No hitNo description
PfamPF000468.9E-161067IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-181167IPR009057Homeodomain-like
CDDcd146869.79E-46197No hitNo description
PROSITE profilePS5084825.559157358IPR002913START domain
CDDcd088751.48E-76161375No hitNo description
SMARTSM002341.0E-41166376IPR002913START domain
SuperFamilySSF559617.0E-39166377No hitNo description
PfamPF018521.3E-48167372IPR002913START domain
Gene3DG3DSA:3.30.530.209.7E-24168365IPR023393START-like domain
PfamPF086706.3E-44694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MQGMDASGKY VRYTNEQVEA LERVYHECPK PSSIRRQQLI KDCPILANIE PKQIKVWFQN  60
RRCREKQRKE ATRLVSVNAK LTALNKLLME ENERLAKHTS QLTVDNHFLR KQLQQSPPIP  120
GSKRPPDQAA VGSTDTSSDS VVTVGLPPQP TPQHSPRGTS PAGLLSIAEE TVTEFVAKAT  180
GTAIDWIQLP GMKPGPDAIG IVSISHGCPG VAARACGLVG LEPNKVAEIL KDRPSWLPDC  240
RCLDILGAFP TGNGGTVELI YTQMYAPTTL APPRDFCTLR YTTLLEDGSL VICERSLTGT  300
QGGPTMPRVQ SFVRAEMLPS GYLIRPCDGG GCIIHIVDHV DLEPWSVPEV LRPLYESSAV  360
LAQKTTIVAF RHLRRVAQEA SGAVGPRGGQ QPAVLRALSQ RLARGFNQAV NGFPDDGWAA  420
TVSDGMDDVS VVLNESPTAK GMGQVAADRL LCSLGGGILC AKASMLLQNV PPALLIRFLR  480
EHRSEWADCD IDADAAAAFR TSTRSGNAGH VQLPLPLAHS VEQEEFLEVV KLERHGGAPN  540
GIHTRDNFLL QFCSGVDENA VGACAQLVFA PVDVAVSDDV PLLPSGFRVI PLDCSLIDGL  600
GLSRTLDLAS TLEGGTEPSR ESGTGLNSSL RSVLTIAFQF AYEAHMREAC ANMARQYVRT  660
VVASVQRVAM ALAPSRLPLH LGAQQPPESP DVVTLTCHIL QSYRLHLGID LTRSDSGDEG  720
LFKAFWHHSD AIMCCAWKQG LPEFTFANQA GLDMLETTSG ALQDLSWEKT LDENGRKTAY  780
NDFTQVLQQG YVYLPAGVRI SSRGQPVTYE RALAWKVLAD DDTTRCIAFL FMNWSFFT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5305550.0KU530555.1 Sphagnum sp. SB-2016 C3HDZ1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399219.10.0homeobox-leucine zipper protein HOX32-like isoform X2
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0Y0G9Y60.0A0A0Y0G9Y6_9BRYO; C3HDZ1 (Fragment)
STRINGPP1S15_11V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]