PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0221s0016.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRF
Protein Properties Length: 575aa    MW: 59217.3 Da    PI: 8.897
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0221s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.62.1e-23157200144
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                           d+epgrCrRtDGKkWRC r+v++++k+CErH+hrgr+rsrk+  
  Sphfalx0221s0016.1.p 157 DPEPGRCRRTDGKKWRCGRDVVPDQKYCERHVHRGRNRSRKHAA 200
                           79***************************************965 PP
2QLQ54.24.5e-1990125237
                   QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                           +FT  Q+++L++Q+l++Ky++a++ vPpeLl +i+k
  Sphfalx0221s0016.1.p  90 PFTSVQWAELEHQALIFKYMMAGVNVPPELLNPIRK 125
                           9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-1089125IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.6E-1490124IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.43890125IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.028157201IPR014977WRC domain
PfamPF088797.0E-20158198IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MGSEHGGGAG LCDTRLLIRG ESGPLSSSSY HHQGAAAAAA AAAYQHYNKP TGASLCGGAA  60
ATQGGGMNVA ESMGTAQCLH SSMISAGRAP FTSVQWAELE HQALIFKYMM AGVNVPPELL  120
NPIRKSVASL INGMTASHHA ANMRWGTMHR GVANNTDPEP GRCRRTDGKK WRCGRDVVPD  180
QKYCERHVHR GRNRSRKHAA DGGGQAGGAS TSSGGNTTTA TTTSSTSSGG GGSSGITNVG  240
PIRGGGTSSS CTPTGSSSTF SLSSFQRPSN LSVKSFSSSH SASPAGGSSP AASSQFGQLP  300
PGSLASSPSA GGGGGASTHL TNKDYRYFQG SMMKSEQGIH GSEQMLSSDG STLRGGGGGV  360
PGGQDSSSSQ MLSNLSRLPS MNQSWHSAMT SKVGQAPGDS AKVQNNSNNS SSSLLHYHSP  420
QMRGLLGQDF GLLPETSQVD HVTHGMSQQH QQHQQHQQQA YHVSNAYGGG GHGAESVSHV  480
GRESEGQPLR HFFDDWPRAS RDQSAMTWGS SGVDESERSN SDNNNNNLTI NTHHGAPNNN  540
NNNNTQLSIS IPITASSSAA LSAQHSGSPP AGCR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400508.11e-107growth-regulating factor 4-like isoform X2
TrEMBLA0A2R6VY151e-108A0A2R6VY15_MARPO; Uncharacterized protein
STRINGPP1S246_146V6.11e-108(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-40growth-regulating factor 5