PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0219s0014.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 807aa    MW: 87359.3 Da    PI: 5.5339
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0219s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07348369426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           ++C f+++ G C  G+ C+F+H+
  Sphfalx0219s0014.1.p 348 VPCTFYLK-GRCTLGADCTFSHD 369
                           79******.*************7 PP
2zf-CCCH20.11.1e-06375398226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           k e+C+ff+    C  Gd C+F+H+
  Sphfalx0219s0014.1.p 375 KSEPCKFFMI-NRCLKGDDCPFSHS 398
                           789***9999.*************8 PP
3zf-CCCH20.48.9e-07403424526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+ff+  G C  Gd+C+F+H 
  Sphfalx0219s0014.1.p 403 PCKFFHTRGLCLDGDNCPFSHE 424
                           7********************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-4344370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065344371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5346369IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-5348369IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4373399IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4374399IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131374400IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5375398IPR000571Zinc finger, CCCH-type
PfamPF146080.0022378397No hitNo description
SMARTSM003560.0077400425IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-14402445IPR000571Zinc finger, CCCH-type
PfamPF146080.092403423No hitNo description
PROSITE profilePS5010313.788403426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MSSVEIPIAV TTPLSMEGMN VEVLGSEKVS TADHTSAQEE VLMGKPSQVV ATADSSQNPP  60
GLMQKTTFVK NAKENDVGLP GPETAHSGAA MASDGWEARE SISPENMDVI EVELEEGEIS  120
GEWEQDEDSE AAAAATTYEN GGVPRNQMQS STPELLEAIA VAHEKANQAL VAALSSNHLG  180
KSHTRNNKRR KGKGAIARQR KKLKLKTLKE SDEKRLQDGN SAMSKDGVKP AEESDSKTGE  240
KRKQSGVNKV SLNKEPEHVE VPREENRGLL SSLIEEEVGL WTTDIGDEQI TSAQVEIEGD  300
NKKKMRGPIT AERKAKKKIA YRIKRARNER KQGIVRNRML LTSKPTSVPC TFYLKGRCTL  360
GADCTFSHDV VPVTKSEPCK FFMINRCLKG DDCPFSHSLN LFPCKFFHTR GLCLDGDNCP  420
FSHEPLTEEQ RKNLQKRLEH DSKEQRTASG AQLVVATSAI TSLDTHPDED SAADYAPTWN  480
TSPAEALGWN VSTAEYMPSS VLSCENTSIQ SSMNSFRAEF PSTPQVESYE NTYMQSSMNS  540
FRAEFPSTPQ VESYENTSMR SSMNSFTAEF PSTPQEESLL EGSNNFPENH VVSILERGCE  600
GIPSENAVLQ AAKRAAAAAA AKAAGTSAAD KLTFGRSTRG LWASPGLTHS ISAGNMIRLH  660
GRVGDPRAME PLQPLLESDI GNENLDNGAQ AKVGRNVGVG GSSVLSDSSF GVSEVGNQVQ  720
EREKEMHRSG GSLDVVSKLP GSSGCKDASS LVTGETPVDQ FRTSKAAGEQ TKGSPELLES  780
PSTERVTAVY TRRKKVDSLL RQALDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cqe_A4e-163754431278KIAA1064 protein
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187202KRRKGKGAIARQRKKL
2188201RRKGKGAIARQRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-