PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0219s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 364aa MW: 39341.1 Da PI: 6.5129 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 4.9e-18 | 196 | 250 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+ +++++ +++ LAk+l+L rqV vWFqNrRa+ k Sphfalx0219s0009.1.p 196 RKKLRLSKEQSALLEESFKDHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTK 250 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.5 | 4.8e-40 | 196 | 285 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq++lLEesF+ +++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr Sphfalx0219s0009.1.p 196 RKKLRLSKEQSALLEESFKDHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLSEENRRLQKELQELR- 283 69*************************************************************************************9. PP HD-ZIP_I/II 90 el 91 +l Sphfalx0219s0009.1.p 284 AL 285 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-18 | 180 | 250 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.27E-18 | 188 | 253 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 192 | 252 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-15 | 194 | 256 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-16 | 196 | 253 | No hit | No description |
Pfam | PF00046 | 2.5E-15 | 196 | 250 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 227 | 250 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 7.4E-11 | 252 | 286 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.7E-19 | 252 | 295 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MLLSGGTGSL RIEMERMRVV ASSSSSLGLT VESGGGYGVL QQRPIWQSPP VQLDLLPMIS 60 SHSSETSTPA APASSVTNNP FSSWQMLASR TNSARSGYDD GEVETFSSGG DGGAAAVGVS 120 IARGDLDMNQ LPSTTDCDEE ETVVLSSPSS TCMKREREKL HVFDLEQDMR TAGGCTDLSV 180 ERGASDDEAD GGSTTRKKLR LSKEQSALLE ESFKDHSTLN PKQKNALAKQ LNLRPRQVEV 240 WFQNRRARTK LKQTEVDCEV LKRCCENLSE ENRRLQKELQ ELRALKLAVV ATTPRACTAA 300 AVIDAHGFSS YMQRPVLSAA TLTMCPSCER VATVENRSAH ITFPKPAGSS SSFSHFLQPS 360 AAY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 194 | 200 | TRKKLRL |
2 | 244 | 252 | RRARTKLKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379716.1 | 1e-106 | homeobox-leucine zipper protein HAT4-like | ||||
TrEMBL | A0A2K1KAR2 | 1e-104 | A0A2K1KAR2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S42_217V6.1 | 1e-105 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47370.1 | 2e-62 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0219s0009.1.p |