PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0219s0008.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 369aa    MW: 40543.5 Da    PI: 6.4048
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0219s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.7e-18226280256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq   Le+ F+ +++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sphfalx0219s0008.1.p 226 RKKLRLSKEQSALLEDSFKDHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTK 280
                           778899***********************************************98 PP
2HD-ZIP_I/II120.67.9e-39226316192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq++lLE+sF+ +++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr y++l+e+n+rL+ke +e+r 
  Sphfalx0219s0008.1.p 226 RKKLRLSKEQSALLEDSFKDHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRYYENLTEDNRRLKKELQEVR- 313
                           69***********************************************************************************999. PP

           HD-ZIP_I/II  90 elk 92 
                           +lk
  Sphfalx0219s0008.1.p 314 ALK 316
                           565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-17210280IPR009057Homeodomain-like
SuperFamilySSF466897.7E-18214283IPR009057Homeodomain-like
PROSITE profilePS5007117.119222282IPR001356Homeobox domain
SMARTSM003897.3E-16224286IPR001356Homeobox domain
PfamPF000463.3E-15226280IPR001356Homeobox domain
CDDcd000865.22E-16226283No hitNo description
PROSITE patternPS000270257280IPR017970Homeobox, conserved site
SMARTSM003402.6E-16282325IPR003106Leucine zipper, homeobox-associated
PfamPF021831.5E-9282317IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MMLASEAGKE GVRIMEMERM IRLDMTTSLG LGHVENLGAA AHHVMPSWAQ QLRRPPPVQL  60
DLLPMSRSSH DSVHETSTAE PPPDSSVTDR FSSLLEQTFL SRMDSCNEGS LFCAGNNNAD  120
GVAVETYSSG GGRGSSPRDI DMNQLPSTSD GDDEAVVSSP SCSIGIMTSN PSITTDQRDQ  180
IKWHVNMQLF DPAELQDMRG TAGGGCDLSS RRGSDDEADG SAATTRKKLR LSKEQSALLE  240
DSFKDHSTLN PKQKNALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEV LKRYYENLTE  300
DNRRLKKELQ EVRALKQLTP AAAAAVSSPA QQLCNNLYRP LQLPAATLTM CPSCENAQSS  360
VIRASFRF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224230TRKKLRL
2274282RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379716.14e-81homeobox-leucine zipper protein HAT4-like
SwissprotP466002e-57HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLA0A2K1KAR21e-79A0A2K1KAR2_PHYPA; Uncharacterized protein
STRINGPP1S42_217V6.12e-80(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.13e-59Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]