PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0218s0019.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NF-X1
Protein Properties Length: 982aa    MW: 107862 Da    PI: 8.3441
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0218s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1186.5e-06253271120
              zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                           CG H C  lCH+GpCp Cpq
  Sphfalx0218s0019.1.p 253 CG-HNCVLLCHPGPCPTCPQ 271
                           **.****************8 PP
2zf-NF-X118.25.3e-06305322118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CGkH C+k CH G CppC
  Sphfalx0218s0019.1.p 305 CGKHNCEKSCHQGACPPC 322
                           ****************** PP
3zf-NF-X117.49.5e-06743760320
              zf-NF-X1   3 kHkCqklCHeGpCppCpq 20 
                           +H C+++CH G+CppC++
  Sphfalx0218s0019.1.p 743 IHLCSRPCHIGDCPPCKA 760
                           699*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.556133210IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590136207IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.47E-5241289No hitNo description
SMARTSM004380.0015253271IPR000967Zinc finger, NF-X1-type
PfamPF014220.0056253270IPR000967Zinc finger, NF-X1-type
CDDcd060081.73E-8295343No hitNo description
SMARTSM004380.013305324IPR000967Zinc finger, NF-X1-type
PfamPF014229.1E-5305322IPR000967Zinc finger, NF-X1-type
CDDcd060086.06E-7348387No hitNo description
PfamPF014227.3352376IPR000967Zinc finger, NF-X1-type
SMARTSM004380.083358377IPR000967Zinc finger, NF-X1-type
CDDcd060084.76E-9402451No hitNo description
SMARTSM004380.22412432IPR000967Zinc finger, NF-X1-type
PfamPF014220.036412431IPR000967Zinc finger, NF-X1-type
CDDcd060086.20E-6455503No hitNo description
SMARTSM004380.2465484IPR000967Zinc finger, NF-X1-type
PfamPF014220.068465483IPR000967Zinc finger, NF-X1-type
CDDcd060081.01E-10482530No hitNo description
PfamPF014220.037486510IPR000967Zinc finger, NF-X1-type
SMARTSM004380.025492511IPR000967Zinc finger, NF-X1-type
SMARTSM0043890555570IPR000967Zinc finger, NF-X1-type
PfamPF0142273559568IPR000967Zinc finger, NF-X1-type
SMARTSM004389.4661680IPR000967Zinc finger, NF-X1-type
PfamPF014220.055661671IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018742760IPR000967Zinc finger, NF-X1-type
PfamPF014220.017743759IPR000967Zinc finger, NF-X1-type
SMARTSM0043816805826IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 982 aa     Download sequence    Send to blast
MQGMAAQSRQ RSGDGGPPAT SAWTVPLYTT AAQQASSLLS SASRDREQQQ LLHRPGSSSQ  60
TSNPVMLGTD QMASSSSSGD DSDSGCDEGD RQGLLRIDAL ESSILANYPV ADCTDDTGLA  120
KIRAMLLAKH SGATACLICL EKVRVTDPIW DCKTGCHAVF HLLCIQSWAQ QALGTAAVHS  180
LGQLSGQHFP MAAAEAEEKA RWHCPKCRSE YSKSELPREY RCFCGKQVDP VNDPWLAPHT  240
CGDKCERPLP GDCGHNCVLL CHPGPCPTCP QLLMFSCFCG GASEMRRCGH RSFSCGKLCR  300
KLLGCGKHNC EKSCHQGACP PCAKTAVHPC KCGRTTALRA CAELDFRCEQ SCGRQLSCQK  360
HYCDKGCHSG SCGECTLAGK RSCPCGKIQH TGITCDYVVP TCGSTCEKPL SCQRHRCNER  420
CHYGPCKDTC RVVLTKSCRC GSLKKEVPCY QDLLCERKCQ RTRDCTRHAC KRRCCDGNCP  480
PCSEVCGKRL KCRNHKCPAP CHRGFCAPCP LTVQISCACG ETAFQVPCGT ERDQRPPRCV  540
KPCRIPAGCL HGANCKVHRC HYGACPACQL PCGAILPCGH CCKERCHGPQ PRPNPEYTLK  600
SKKKKVRHGT DPTNTGSPCP PCSEWIVQQC LGHHSGSERP MVCSQKSLFQ CEKLCGNPLP  660
CGNHQCQSIC HLVTVPRCKS GEVQKPQVMS AIENGHNYNK CNTRFGTEYL TQEQLAQTNG  720
VAEVDTCERC NLPCQKERPD GCIHLCSRPC HIGDCPPCKA LVKRPCYCRA LVHAFECSMF  780
NSATKEAQAK LLPCGGPCHQ KLPNCAHLCP DICHPNACPT ATNCRKKVVV RCACQRLKKE  840
WLCCEVQAAQ KGEAGSKDLP KGTLPPGCGL LLCDQECMRL AAEQKAKEES EALRQRKLKE  900
PEPKEIVVRS KRRRRSALAD EKKNSSWFQE WMVTATQWFW RLLWVVIGIL LIIYGYKGLQ  960
GLSDWMNARD AIRPRKMPGR F*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402753.10.0NF-X1-type zinc finger protein NFXL2-like
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2K1L2V00.0A0A2K1L2V0_PHYPA; Uncharacterized protein
STRINGPP1S135_24V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors